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In biomedical research, validation of a new scientific discovery is tied to the reproducibility of its experimental results. However, in genomics, the definition and implementation of reproducibility still remain imprecise. Here, we argue…

Production state-machine replication (SMR) implementations are complex, multi-layered architectures comprising data dissemination, ordering, execution, and reconfiguration components. Existing research consensus protocols rarely discuss…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-11 Allen Clement , Natacha Crooks , Neil Giridharan , Alex Shamis

Reasoning has emerged as the next major frontier for language models (LMs), with rapid advances from both academic and industrial labs. However, this progress often outpaces methodological rigor, with many evaluations relying on…

Machine Learning · Computer Science 2025-10-08 Andreas Hochlehnert , Hardik Bhatnagar , Vishaal Udandarao , Samuel Albanie , Ameya Prabhu , Matthias Bethge

The development of clinically reliable artificial intelligence (AI) systems for mammography is hindered by profound heterogeneity in data quality, metadata standards, and population distributions across public datasets. This heterogeneity…

Image and Video Processing · Electrical Eng. & Systems 2025-11-05 Yalda Zafari , Hongyi Pan , Gorkem Durak , Ulas Bagci , Essam A. Rashed , Mohamed Mabrok

Machine learning (ML) is poised to drive innovations in clinical microbiomics, such as in disease diagnostics and prognostics. However, the successful implementation of ML in these domains necessitates the development of reproducible,…

Genomics · Quantitative Biology 2024-12-02 Natasha K. Dudek , Mariam Chakhvadze , Saba Kobakhidze , Omar Kantidze , Yuriy Gankin

Since the creation of the Web, recommender systems (RSs) have been an indispensable mechanism in information filtering. State-of-the-art RSs primarily depend on categorical features, which ecoded by embedding vectors, resulting in…

Information Retrieval · Computer Science 2025-01-22 Hung Vinh Tran , Tong Chen , Quoc Viet Hung Nguyen , Zi Huang , Lizhen Cui , Hongzhi Yin

Pyserini is an easy-to-use Python toolkit that supports replicable IR research by providing effective first-stage retrieval in a multi-stage ranking architecture. Our toolkit is self-contained as a standard Python package and comes with…

Information Retrieval · Computer Science 2021-02-22 Jimmy Lin , Xueguang Ma , Sheng-Chieh Lin , Jheng-Hong Yang , Ronak Pradeep , Rodrigo Nogueira

Recommender systems are essential tools in the digital landscape for connecting users with content that more closely aligns with their preferences. Matrix completion is a widely used statistical framework for such systems, aiming to predict…

Machine Learning · Statistics 2025-07-30 Aurore Archimbaud , Andreas Alfons , Ines Wilms

Machine learning (ML) techniques are enjoying rapidly increasing adoption. However, designing and implementing the systems that support ML models in real-world deployments remains a significant obstacle, in large part due to the radically…

The advancement of scientific knowledge increasingly depends on ensuring that data-driven research is reproducible: that two people with the same data obtain the same results. However, while the necessity of reproducibility is clear, there…

Computers and Society · Computer Science 2020-08-28 Audrey M. Bertin , Benjamin S. Baumer

Multi-criteria decision-making often requires finding a small representative set from the database. A recently proposed method is the regret minimization set (RMS) query. RMS returns a size $r$ subset $S$ of dataset $D$ that minimizes the…

Machine Learning · Computer Science 2022-03-10 Xingxing Xiao , Jianzhong Li

Reproducibility is central to the credibility of scientific findings, yet complete replication studies are costly and infrequent. However, many biological experiments contain internal replication, which is defined as repetition across…

Applications · Statistics 2025-06-05 Stanley E. Lazic

This paper introduces reproducible research, and explains its importance, benefits and challenges. Some important tools for conducting reproducible research in Transportation Research are also introduced. Moreover, the source code for…

Digital Libraries · Computer Science 2021-05-17 Zuduo Zheng

Difficulties in replication and reproducibility of empirical evidences in machine learning research have become a prominent topic in recent years. Ensuring that machine learning research results are sound and reliable requires…

Machine Learning · Computer Science 2024-03-20 Tobias Hille , Maximilian Stubbemann , Tom Hanika

The deep model training procedure requires large-scale datasets of annotated data. Due to the difficulty of annotating a large number of samples, label noise caused by incorrect annotations is inevitable, resulting in low model performance…

Machine Learning · Computer Science 2023-12-12 Fengpeng Li , Kemou Li , Jinyu Tian , Jiantao Zhou

Explainable information retrieval is an emerging research area aiming to make transparent and trustworthy information retrieval systems. Given the increasing use of complex machine learning models in search systems, explainability is…

Information Retrieval · Computer Science 2022-11-07 Avishek Anand , Lijun Lyu , Maximilian Idahl , Yumeng Wang , Jonas Wallat , Zijian Zhang

Human perceptual studies are the gold standard for the evaluation of many research tasks in machine learning, linguistics, and psychology. However, these studies require significant time and cost to perform. As a result, many researchers…

Human-Computer Interaction · Computer Science 2022-03-10 Max Morrison , Brian Tang , Gefei Tan , Bryan Pardo

Large Language Models (LLMs) have shown strong capabilities in document re-ranking, a key component in modern Information Retrieval (IR) systems. However, existing LLM-based approaches face notable limitations, including ranking…

Information Retrieval · Computer Science 2025-10-03 Pinhuan Wang , Zhiqiu Xia , Chunhua Liao , Feiyi Wang , Hang Liu

Machine learning algorithms designed to characterize, monitor, and intervene on human health (ML4H) are expected to perform safely and reliably when operating at scale, potentially outside strict human supervision. This requirement warrants…

Machine Learning · Computer Science 2019-07-03 Matthew B. A. McDermott , Shirly Wang , Nikki Marinsek , Rajesh Ranganath , Marzyeh Ghassemi , Luca Foschini

Modern technologies are producing a wealth of data with complex structures. For instance, in two-dimensional digital imaging, flow cytometry, and electroencephalography, matrix type covariates frequently arise when measurements are obtained…

Methodology · Statistics 2013-10-22 Hua Zhou , Lexin Li