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A fundamental challenge in developing data-driven approaches to ecological systems for tasks such as state estimation and prediction is the paucity of the observational or measurement data. For example, modern machine-learning techniques…

Quantitative Methods · Quantitative Biology 2024-10-11 Zheng-Meng Zhai , Bryan Glaz , Mulugeta Haile , Ying-Cheng Lai

Complex interactions between genes or proteins contribute a substantial part to phenotypic evolution. Here we develop an evolutionarily grounded method for the cross-species analysis of interaction networks by {\em alignment}, which maps…

Molecular Networks · Quantitative Biology 2009-11-13 Johannes Berg , Michael Lässig

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner

The optimal mixing evolutionary algorithms (OMEAs) have recently drawn much attention for their robustness, small size of required population, and efficiency in terms of number of function evaluations (NFE). In this paper, the performances…

Neural and Evolutionary Computing · Computer Science 2018-07-30 Yu-Fan Tung , Tian-Li Yu

In the domain of multi-objective optimization, evolutionary algorithms are distinguished by their capability to generate a diverse population of solutions that navigate the trade-offs inherent among competing objectives. This has catalyzed…

Neural and Evolutionary Computing · Computer Science 2025-01-07 Yuxin Ma , Zherui Zhang , Ran Cheng , Yaochu Jin , Kay Chen Tan

Quantitative population modelling is an invaluable tool for identifying the cascading effects of ecosystem management and interventions. Ecosystem models are often constructed by assuming stability and coexistence in ecological communities…

Populations and Evolution · Quantitative Biology 2024-09-06 Sarah A. Vollert , Christopher Drovandi , Matthew P. Adams

Evolutionary algorithms have been successful in solving multi-objective optimization problems (MOPs). However, as a class of population-based search methodology, evolutionary algorithms require a large number of evaluations of the objective…

Neural and Evolutionary Computing · Computer Science 2024-08-16 Xueming Yan , Yaochu Jin

Predictive dynamical models for marine ecosystems are used for a variety of needs. Due to sparse measurements and limited understanding of the myriad of ocean processes, there is however significant uncertainty. There is model uncertainty…

Computational Engineering, Finance, and Science · Computer Science 2023-06-06 Abhinav Gupta , Pierre F. J. Lermusiaux

Learning classifier systems (LCSs) are evolutionary machine learning algorithms, flexible enough to be applied to reinforcement, supervised and unsupervised learning problems with good performance. Recently, self organizing classifiers were…

Neural and Evolutionary Computing · Computer Science 2018-11-21 Danilo Vasconcellos Vargas , Hirotaka Takano , Junichi Murata

We propose a model for the evolutionary ecology of words as one attempt to extend evolutionary game theory and agent-based models by utilizing the rich linguistic expressions of Large Language Models (LLMs). Our model enables the emergence…

Populations and Evolution · Quantitative Biology 2025-05-12 Reiji Suzuki , Takaya Arita

A new model for evolving Evolutionary Algorithms (EAs) is proposed in this paper. The model is based on the Multi Expression Programming (MEP) technique. Each MEP chromosome encodes an evolutionary pattern that is repeatedly used for…

Neural and Evolutionary Computing · Computer Science 2021-10-13 Mihai Oltean

Bayesian Networks (BNs) are of interest from an explainable AI viewpoint, offering transparent probabilistic models for decision support. Baymex is a recently introduced multi-objective evolutionary algorithm for learning discretized BNs,…

Machine Learning · Computer Science 2026-05-29 Damy M. F. Ha , Tanja Alderliesten , Peter A. N. Bosman

This research addresses the challenge of characterizing the complexity and unpredictability of basins within various dynamical systems. The main focus is on demonstrating the efficiency of convolutional neural networks (CNNs) in this field.…

Machine Learning · Computer Science 2024-06-18 David Valle , Alexandre Wagemakers , Miguel A. F. Sanjuán

Data acquisition in animal ecology is rapidly accelerating due to inexpensive and accessible sensors such as smartphones, drones, satellites, audio recorders and bio-logging devices. These new technologies and the data they generate hold…

Lakes provide a wide range of valuable ecosystem services, such as water supply, biodiversity habitats, and carbon sequestration. However, lakes are increasingly threatened by climate change and human activities. Therefore, continuous…

Computer Vision and Pattern Recognition · Computer Science 2024-08-21 Yutian Han , Baoxiang Huang , He Gao

The fusion of the multi-agent paradigm with evolutionary computation yielded promising results in many optimization problems. Evolutionary multi-agent system (EMAS) are more similar to biological evolution than classical evolutionary…

Multiagent Systems · Computer Science 2015-08-13 D. Krzywicki , W. Turek , A. Byrski , M. Kisiel-Dorohinicki

Underwater acoustic cameras are high potential devices for many applications in ecology, notably for fisheries management and monitoring. However how to extract such data into high value information without a time-consuming entire dataset…

Computer Vision and Pattern Recognition · Computer Science 2022-08-30 Guglielmo Fernandez Garcia , François Martignac , Marie Nevoux , Laurent Beaulaton , Thomas Corpetti

In the past 30 years, scientists have searched nature, including animals and insects, and biology in order to discover, understand, and model solutions for solving large-scale science challenges. The study of bionics reveals that how the…

Neural and Evolutionary Computing · Computer Science 2022-02-09 Farid Ghareh Mohammadi , Farzan Shenavarmasouleh , Khaled Rasheed , Thiab Taha , M. Hadi Amini , Hamid R. Arabnia

This work concerns the evolutionary approaches to distributed stochastic black-box optimization, in which each worker can individually solve an approximation of the problem with nature-inspired algorithms. We propose a distributed evolution…

Neural and Evolutionary Computing · Computer Science 2022-04-12 Xiaoyu He , Zibin Zheng , Chuan Chen , Yuren Zhou , Chuan Luo , Qingwei Lin

Marine Saliency Segmentation (MSS) plays a pivotal role in various vision-based marine exploration tasks. However, existing marine segmentation techniques face the dilemma of object mislocalization and imprecise boundaries due to the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Laibin Chang , Yunke Wang , JiaXing Huang , Longxiang Deng , Bo Du , Chang Xu