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Related papers: Towards a FAIR Documentation of Workflows and Mode…

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There has been a large focus in recent years on making assets in scientific research findable, accessible, interoperable and reusable, collectively known as the FAIR principles. A particular area of focus lies in applying these principles…

Human-Computer Interaction · Computer Science 2021-11-02 Robin A Richardson , Remzi Celebi , Sven van der Burg , Djura Smits , Lars Ridder , Michel Dumontier , Tobias Kuhn

Background: Biomedical research projects deal with data management requirements from multiple sources like funding agencies' guidelines, publisher policies, discipline best practices, and their own users' needs. We describe functional and…

Scientific data management is at a critical juncture, driven by exponential data growth, increasing cross-domain dependencies, and a severe reproducibility crisis in modern research. Traditional centralized data management approaches are…

Databases · Computer Science 2025-04-30 Sebastian Beyvers , Jannis Hochmuth , Lukas Brehm , Maria Hansen , Alexander Goesmann , Frank Förster

The use of machine learning techniques has expanded in education research, driven by the rich data from digital learning environments and institutional data warehouses. However, replication of machine learned models in the domain of the…

Computers and Society · Computer Science 2018-08-23 Josh Gardner , Yuming Yang , Ryan Baker , Christopher Brooks

Scientific workflows have become essential for orchestrating complex computational processes across distributed resources, managing large datasets, and ensuring reproducibility in modern research. The Workflows Community Summit 2025, held…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-06 Irene Bonati , Silvina Caino-Lores , Tainã Coleman , Sagar Dolas , Sandro Fiore , Venkatesh Kannan , Marco Verdicchio , Sean R. Wilkinson , Rafael Ferreira da Silva

The representation of workflows and processes is essential in materials science engineering, where experimental and computational reproducibility depend on structured and semantically coherent process models. Although numerous ontologies…

Information Retrieval · Computer Science 2025-09-30 Ebrahim Norouzi , Sven Hertling , Jörg Waitelonis , Harald Sack

Business Process Model and Notation (BPMN) is a widely used standard for modelling business processes. While automated planning has been proposed as a method for simulating and reasoning about BPMN workflows, most implementations remain…

Artificial Intelligence · Computer Science 2025-11-25 Jasper Nie , Christian Muise , Victoria Armstrong

Continuous evolution in modern software often causes documentation, tutorials, and examples to be out of sync with changing interfaces and frameworks. Relying on outdated documentation and examples can lead programs to fail or be less…

Software Engineering · Computer Science 2022-04-28 Roshanak Zilouchian Moghaddam , Spandan Garg , Colin B. Clement , Yevhen Mohylevskyy , Neel Sundaresan

Materials Cloud is a platform designed to enable open and seamless sharing of resources for computational science, driven by applications in materials modelling. It hosts 1) archival and dissemination services for raw and curated data,…

Over the last two decades, the field of computational science has seen a dramatic shift towards incorporating high-throughput computation and big-data analysis as fundamental pillars of the scientific discovery process. This has…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-18 Martin Uhrin , Sebastiaan P. Huber , Jusong Yu , Nicola Marzari , Giovanni Pizzi

Scientific workflows are a cornerstone of modern scientific computing. They are used to describe complex computational applications that require efficient and robust management of large volumes of data, which are typically stored/processed…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-03 Rafael Ferreira da Silva , Loïc Pottier , Tainã Coleman , Ewa Deelman , Henri Casanova

Modern workflows run on increasingly heterogeneous computing architectures and with this heterogeneity comes additional complexity. We aim to apply the FAIR principles for research reproducibility by developing software to collect metadata…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-19 Polina Shpilker , Line Pouchard

Large-scale scientific collaborations like ATLAS, Belle II, CMS, DUNE, and others involve hundreds of research institutes and thousands of researchers spread across the globe. These experiments generate petabytes of data, with volumes soon…

Scientific workflows are powerful tools for management of scalable experiments, often composed of complex tasks running on distributed resources. Existing cyberinfrastructure provides components that can be utilized within repeatable…

Computers and Society · Computer Science 2019-03-05 Ilkay Altintas , Shweta Purawat , Daniel Crawl , Alok Singh , Kyle Marcus

A concise and measurable set of FAIR (Findable, Accessible, Interoperable and Reusable) principles for scientific data is transforming the state-of-practice for data management and stewardship, supporting and enabling discovery and…

Artificial Intelligence · Computer Science 2023-08-21 Nikil Ravi , Pranshu Chaturvedi , E. A. Huerta , Zhengchun Liu , Ryan Chard , Aristana Scourtas , K. J. Schmidt , Kyle Chard , Ben Blaiszik , Ian Foster

The evolution of a Master's programme, like many other human institutions, can be viewed as a self-organising system whose underlying structures and dynamics arise primarily from the interaction of its faculty and students. Identifying…

Digital Libraries · Computer Science 2025-06-27 Nathalia Chaparro , Sergio Rojas-Galeano

In the rapidly evolving field of bioimaging, the integration and orchestration of Findable, Accessible, Interoperable, and Reusable (FAIR) image analysis workflows remains a challenge. We introduce BIOMERO, a bridge connecting OMERO, a…

Software Engineering · Computer Science 2024-07-26 Torec T. Luik , Rodrigo Rosas-Bertolini , Eric A. J. Reits , Ron A. Hoebe , Przemek M. Krawczyk

Mathematical software systems are becoming more and more important in pure and applied mathematics in order to deal with the complexity and scalability issues inherent in mathematics. In the last decades we have seen a cambric explosion of…

Mathematical Software · Computer Science 2020-02-13 Katja Bercic , Jacques Carette , William M. Farmer , Michael Kohlhase , Dennis Müller , Florian Rabe , Yasmine Sharoda

As artificial intelligence (AI) gains greater adoption in a wide variety of applications, it has immense potential to contribute to mathematical discovery, by guiding conjecture generation, constructing counterexamples, assisting in…

Artificial Intelligence · Computer Science 2023-10-27 Hassen Saidi , Susmit Jha , Tuhin Sahai

It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets.…

Digital Libraries · Computer Science 2022-10-17 Mark A. Musen , Martin J. O'Connor , Erik Schultes , Marcos Martinez-Romero , Josef Hardi , John Graybeal