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The problem of reliability of the dynamics in biological regulatory networks is studied in the framework of a generalized Boolean network model with continuous timing and noise. Using well-known artificial genetic networks such as the…

Molecular Networks · Quantitative Biology 2008-05-28 Stefan Braunewell , Stefan Bornholdt

Random Boolean networks have been used widely to explore aspects of gene regulatory networks. A modified form of the model through which to systematically explore the effects of increasing the number of gene states has previously been…

Molecular Networks · Quantitative Biology 2023-02-06 Larry Bull

In this paper we investigate a neural network model in which weights between computational nodes are modified according to a local learning rule. To determine whether local learning rules are sufficient for learning, we encode the network…

Neural and Evolutionary Computing · Computer Science 2025-12-08 Jonathan Baxter

Biological networks such as gene regulatory networks possess desirable properties. They are more robust and controllable than random networks. This motivates the search for structural and dynamical features that evolution has incorporated…

Molecular Networks · Quantitative Biology 2024-02-16 Claus Kadelka , David Murrugarra

The distribution of cultural variants in a population is shaped by both neutral evolutionary dynamics and by selection pressures, which include several individual cognitive biases, demographic factors and social network structures. The…

Social and Information Networks · Computer Science 2019-02-19 José Segovia Martín , Bradley Walker , Nicolas Fay , Monica Tamariz

We present an emergent stochastic flocking dynamics of the Cucker-Smale (CS) ensemble under randomly switching topologies. The evolution of the CS ensemble with randomly switching topologies involves two random components (switching times…

Optimization and Control · Mathematics 2019-11-19 Jiu-Gang Dong , Seung-Yeal Ha , Jinwook Jung , Doheon Kim

A major aim of evolutionary biology is to explain the respective roles of adaptive versus non-adaptive changes in the evolution of complexity. While selection is certainly responsible for the spread and maintenance of complex phenotypes,…

Populations and Evolution · Quantitative Biology 2017-01-17 Thomas LaBar , Christoph Adami

Population structure and spatial heterogeneity are integral components of evolutionary dynamics, in general, and of evolution of cooperation, in particular. Structure can promote the emergence of cooperation in some populations and suppress…

Populations and Evolution · Quantitative Biology 2017-10-10 Yu-Ting Chen , Alex McAvoy , Martin A. Nowak

Evolutionary game theory is a mathematical approach to studying how social behaviors evolve. In many recent works, evolutionary competition between strategies is modeled as a stochastic process in a finite population. In this context, two…

Populations and Evolution · Quantitative Biology 2017-08-16 Christine Sample , Benjamin Allen

We propose a synthetical weights' dynamic mechanism for weighted networks which takes into account the influences of strengths of nodes, weights of links and incoming new vertices. Strength/Weight preferential strategies are used in these…

Physics and Society · Physics 2007-09-10 Lujun Fang , Zhongzhi Zhang , Shuigeng Zhou , Jihong Guan

The dynamical mechanisms that can stabilize the coexistence of species (or strategies) are of substantial interest for the maintenance of biodiversity and in sociobehavioural dynamics. We investigate the mean extinction time in the…

Populations and Evolution · Quantitative Biology 2010-03-16 Markus Schütt , Jens Christian Claussen

Game theoretic tools are utilized to analyze a one-locus continuous selection model of sex-specific meiotic drive by considering nonequivalence of the viabilities of reciprocal heterozygotes that might be noticed at an imprinted locus. The…

Populations and Evolution · Quantitative Biology 2015-12-07 Bijan Sarkar

Evolutionary game dynamics describes the spreading of successful strategies in a population of reproducing individuals. Typically, the microscopic definition of strategy spreading is stochastic, such that the dynamics becomes deterministic…

Populations and Evolution · Quantitative Biology 2015-05-13 Philipp M. Altrock , Arne Traulsen

Topology and weights are closely related in weighted complex networks and this is reflected in their modular structure. We present a simple network model where the weights are generated dynamically and they shape the developing topology. By…

Physics and Society · Physics 2008-01-30 J. M. Kumpula , J. -P. Onnela , J. Saramaki , K. Kaski , J. Kertesz

We investigate the robustness of random networks reinforced by adding hidden edges against targeted attacks. This study focuses on two types of reinforcement: uniform reinforcement, where edges are randomly added to all nodes, and selective…

Physics and Society · Physics 2024-07-30 Tomoyo Kawasumi , Takehisa Hasegawa

Social network structure is one of the key determinants of human language evolution. Previous work has shown that the network of social interactions shapes decentralized learning in human groups, leading to the emergence of different kinds…

Artificial Intelligence · Computer Science 2020-07-21 Marina Dubova , Arseny Moskvichev , Robert Goldstone

Real-world networks process structured connections since they have non-trivial vertex degree correlation and clustering. Here we propose a toy model of structure formation in real-world weighted network. In our model, a network evolves by…

Physics and Society · Physics 2015-06-26 C. C. Leung , H. F. Chau

Convolutional neural networks belong to the most successul image classifiers, but the adaptation of their network architecture to a particular problem is computationally expensive. We show that an evolutionary algorithm saves training time…

Neural and Evolutionary Computing · Computer Science 2018-12-20 Jonas Prellberg , Oliver Kramer

Population expansions trigger many biomedical and ecological transitions, from tumor growth to invasions of non-native species. Although population spreading often selects for more invasive phenotypes, we show that this outcome is far from…

Populations and Evolution · Quantitative Biology 2015-12-14 Kirill S. Korolev

Growing synthetic networks that follow power law distributions of a node's degree often involves adding one node at a time. Each node is added to the network with a fixed amount of edges and those edges are frozen for all future time steps.…

Physics and Society · Physics 2026-01-27 Justin Downes