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This is a survey of some recent developments in the study of complements of line arrangements in the complex plane. We investigate the fundamental groups and finite covers of those complements, focusing on homological and enumerative…

Algebraic Geometry · Mathematics 2013-12-17 Alexander I. Suciu

Polymer-coated pores play a crucial role in nucleo-cytoplasmic transport and in a number of biomimetic and nanotechnological applications. Here we present Monte Carlo and Density Functional Theory approaches to identify different collective…

Soft Condensed Matter · Physics 2015-05-30 Dino Osmanovic , Joe Bailey , Anthony H. Harker , Ariberto Fassati , Bart W. Hoogenboom , Ian J. Ford

We study Morse theory on noncompact manifolds equipped with exhaustions by compact pieces, defining the Morse homology of a pair which consists of the manifold and related geometric/homotopy data. We construct a collection of Morse data…

Geometric Topology · Mathematics 2019-11-12 Taesu Kim

We analyze a (1+1)-dimension directed random walk model of a polymer dipped in a medium constituted by two immiscible solvents separated by a flat interface. The polymer chain is heterogeneous in the sense that a single monomer may…

Probability · Mathematics 2007-05-23 Erwin Bolthausen , Giambattista Giacomin

We prove the fractal crumpled structure of collapsed unknotted polymer ring. In this state the polymer chain forms a system of densely packed folds, mutually separated in all scales. The proof is based on the numerical and analytical…

Statistical Mechanics · Physics 2007-05-23 Sergei Nechaev , Oleg Vasilyev

We introduce and analyze the characteristic foliation induced by a contact structure on a branched surface, in particular a branched standard spine of a 3-manifold. We extend to (fairly general) singular foliations of branched surfaces the…

Geometric Topology · Mathematics 2011-01-18 Riccardo Benedetti , Carlo Petronio

A coarse grained model for flexible polymers end-grafted to repulsive spherical nanoparticles is studied for various chain lengths and grafting densities under good solvent conditions, by Molecular Dynamics methods and density functional…

Soft Condensed Matter · Physics 2015-05-18 Federica Lo Verso , Sergei A. Egorov , Andrey Milchev , Kurt Binder

Conformations of a single semiflexible polymer chain dissolved in a low molecular weight liquid crystalline solvents (nematogens) are examined by using a mean field theory. We takes into account a stiffness and partial orientational…

Soft Condensed Matter · Physics 2009-11-07 Akihiko Matsuyama

Formation of base pairs between the nucleotides of an RNA sequence gives rise to a complex and often highly branched RNA structure. While numerous studies have demonstrated the functional importance of the high degree of RNA branching --…

Biological Physics · Physics 2023-06-21 Domen Vaupotič , Angelo Rosa , Luca Tubiana , Anže Božič

The structure of polymer coils near interfaces between coexisting phases of symmetrical polymer mixtures (AB) is discussed, as well as the structure of symmetric diblock copolymers of the same chain length N adsorbed at the interface. The…

Soft Condensed Matter · Physics 2015-06-25 K. Binder , M. Mueller , F. Schmid , A. Werner

Given that the physical properties of polymeric liquids extend on a wide range of lengthscales, it is computationally convenient to represent them by coarse-grained (CG) descriptions at various granularities to investigate local and global…

Soft Condensed Matter · Physics 2019-06-06 Mohammadhasan Dinpajooh , Marina G. Guenza

Nanoscale and microscale confinement of biopolymers naturally occurs in cells and has been recently achieved in artificial structures designed for nanotechnological applications. Here, we present an extensive theoretical investigation of…

Soft Condensed Matter · Physics 2007-06-13 Frederik Wagner , Gianluca Lattanzi , Erwin Frey

We present structural properties of two-dimensional polymers as far as they can be described by percolation theory. The percolation threshold, critical exponents and fractal dimensions of clusters are determined by computer simulation and…

Condensed Matter · Physics 2009-10-22 Christian Muenkel , Dieter W. Heermann

The equilibrium statistical mechanics of classical directed polymers in 2 dimensions is well known to be equivalent to the imaginary-time quantum dynamics of a 1+1-dimensional many-particle system, with polymer configurations corresponding…

Soft Condensed Matter · Physics 2013-05-30 D. Zeb Rocklin , Shina Tan , Paul M. Goldbart

A copolymer is a chain of repetitive units (monomers) that are almost identical, but they differ in their degree of affinity for certain solvents. This difference leads to striking phenomena when the polymer fluctuates in a nonhomogeneous…

Probability · Mathematics 2010-11-11 Francesco Caravenna , Giambattista Giacomin

We consider star polymers, consisting of two different polymer species, in a solvent subject to quenched correlated structural obstacles. We assume that the disorder is correlated with a power-law decay of the pair correlation function…

Soft Condensed Matter · Physics 2011-01-17 Viktoria Blavatska , Christian von Ferber , Yurij Holovatch

We discuss here geometric structures of condensed matters by means of a fundamental topological method. Any geometric pattern can be universally represented by a decomposition space of a topological space consisting of the infinite product…

Mathematical Physics · Physics 2019-09-04 Shousuke Ohmori , Yoshihiro Yamazaki , Tomoyuki Yamamoto , Akihiko Kitada

The conformations of topologically constrained double-folded ring polymers can be described as wrappings of randomly branched primitive trees. We extend previous work on the tree statistics under different (solvent) conditions to explore…

Soft Condensed Matter · Physics 2019-01-23 Angelo Rosa , Ralf Everaers

Recent experimental methods allow to monitor the response of macromolecules to locally applied fields, complementing usual, mesoscopic techniques. Based on the Rouse-model and its extension to generalized Gaussian structures (GGS), we…

Condensed Matter · Physics 2009-11-07 R. Burioni , D. Cassi , A. Blumen

A linear copolymer made of two reciprocally attracting N-monomer blocks collapses to a compact phase through a novel transition, whose exponents are determined with extensive MC simulations in two and three dimensions. In the former case,…

Soft Condensed Matter · Physics 2009-10-31 E. Orlandini , F. Seno , A. L. Stella