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The large-conductance, calcium-activated potassium (BK) channel lacks the typical intracellular bundle-crossing gate present in most ion channels of the 6TM family. This observation, initially inferred from Ca$^{2+}$-free-pore accessibility…

Biomolecules · Quantitative Biology 2024-05-09 Lucia Coronel , Giovanni Di Muccio , Brad Rothberg , Alberto Giacomello , Vincenzo Carnevale

Potassium (K$^+$) channels regulate the flux of K$^+$ ions through cell membranes and plays significant roles in many physiological functions. This work studies the KcsA potassium channel, including the selectivity and current-voltage (IV)…

Biological Physics · Physics 2019-08-14 Zilong Song , Xiulei Cao , Tzyy-Leng Horng , Huaxiong Huang

Theoretical and experimental evidences support the hypothesis that extremely low-frequency electromagnetic fields can affect voltage-gated channels. Little is known, however, about their effect on potassium channels. Kv1.3, a member of the…

Subcellular Processes · Quantitative Biology 2015-08-26 Claudia Cecchetto , Marta Maschietto , Pasquale Boccaccio , Stefano Vassanelli

Manipulating the superconducting states of high-T_c cuprate superconductors in an efficient and reliable way is of great importance for their applications in next-generation electronics. Traditional methods are mostly based on a…

The conduction and selectivity of calcium/sodium ion channels are described in terms of ionic Coulomb blockade, a phenomenon based on charge discreteness and an electrostatic model of an ion channel. This novel approach provides a unified…

Biological Physics · Physics 2014-05-07 I. Kh. Kaufman , P. V. E. McClintock , R. S. Eisenberg

ClC chloride channels possess a homodimeric structure in which each monomer contains an independent chloride ion pathway. ClC channel gating is regulated by chloride ion concentration, pH, and voltage. Based on structural and physiological…

Biological Physics · Physics 2007-05-23 J. Yin , Z. Kuang , U. Mahankali , T. L. Beck

In this work, we present a quantum transport model for the selectivity filter in the KcsA potassium ion channel. This model is fully consistent with the fact that two conduction pathways are involved in the translocation of ions thorough…

Biological Physics · Physics 2015-06-18 A. A. Cifuentes , F. L. Semião

The opening rate of voltage-gated potassium ion channels exhibits a characteristic, knee-like turnover where the common exponential voltage-dependence changes suddenly into a linear one. An explanation of this puzzling crossover is put…

Biological Physics · Physics 2009-11-07 Igor Goychuk , Peter Hänggi

This study demonstrates multilevel switching at 1.5 K of Al2O3/TiO2-x resistive memory devices fabricated with CMOS-compatible processes and materials. The I-V characteristics exhibit a negative differential resistance (NDR) effect due to a…

The study of selection and gating in potassium channels is a very important issue in modern biology. Indeed such structures are known in all types of cells in all organisms where they play many important functional roles. The mechanism of…

Cell Behavior · Quantitative Biology 2015-05-30 D. Andreucci , D. Bellaveglia , E. N. M. Cirillo , S. Marconi

We consider an exactly tractable model of the Kramers type for the voltage-dependent gating dynamics of single ion channels. It is assumed that the gating dynamics is caused by the thermally activated transitions in a bistable potential.…

Biological Physics · Physics 2009-11-11 Igor Goychuk , Peter Hanggi

We introduce a self-consistent multi-species kinetic theory based on the structure of the narrow voltage-gated potassium channel. Transition rates depend on a complete energy spectrum with contributions including the dehydration amongst…

Biological Physics · Physics 2017-04-12 W. A. T. Gibby , D. G. Luchinsky , I. Kh. Kaufman A. Ward , P. V. E. McClintock

Nanofluidic ionic transistors typically require gate voltages above 1 V and operate only at sub millimolar ionic strengths, limiting their biocompatible applications. We demonstrate ionic transistors consisting of single sub 10 nm nanopores…

An intense controversy has surrounded the mechanism of voltage-gating in ion channels. We interpreted the two leading models of voltage-gating with respect to the thermodynamic energetics of membrane insertion of the voltage-sensing…

Biomolecules · Quantitative Biology 2011-04-21 Ashok Palaniappan

Despite the molecular evidence that close to linear steady state I-V relationship in mammalian astrocytes reflects a total current resulting from more than one differently regulated K+ conductances, detailed ODE models of membrane voltage…

Neurons and Cognition · Quantitative Biology 2023-05-03 Predrag Janjic , Dimitar Solev , Ljupco Kocarev

Quantum calculations on the voltage sensing domain (VSD) of the Kv1.2 potassium channel (pdb: 3Lut)have been carried out on a 904 atoms subset of the VSD, plus 24 water molecules. Side chains pointing away from the center of the VSD were…

Biomolecules · Quantitative Biology 2018-10-10 Alisher M. Kariev , Michael E. Green

Ionic Coulomb blockade (ICB) is an electrostatic phenomenon recently discovered in low-capacitance ion channels/nanopores. Depending on the fixed charge that is present, ICB strongly and selectively influences the ease with which a given…

Biological Physics · Physics 2017-07-31 I. Kh. Kaufman , W. A. T. Gibby , D. G. Luchinsky , P. V. E. McClintock

In this work we have theoretically investigated how the action potential generation and its associated intrinsic properties are affected in presence of ion channel blockers by adapting Gillepie's stochastic simulation technique on a very…

Biological Physics · Physics 2018-10-02 Krishnendu Pal , Gautam Gangopadhyay

Potassium (K-) channels catalyze K+ ion permeation across cellular membranes while simultaneously discriminating their permeation over Na+ ions by more than a factor of a thousand. Structural studies show bare K+ ions occupying the…

Biological Physics · Physics 2009-11-13 Sameer Varma , Susan B. Rempe

We applied a periodic magnetic field of frequency 16 Hz and amplitude 16 nT to a human I_Ks channel, expressed in a Xenopus oocyte and varied the membrane depolarization between -100 mV and +100 mV. We observed a maximal increase of about…

Quantitative Methods · Quantitative Biology 2009-05-21 M. Shaked , G. Gibor , B. Attali , Z. Schuss
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