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Medical text embedding models are foundational to a wide array of healthcare applications, ranging from clinical decision support and biomedical information retrieval to medical question answering, yet they remain hampered by two critical…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Hamidreza Mahyar

Many of the existing methods for learning joint embedding of images and text use only supervised information from paired images and its textual attributes. Taking advantage of the recent success of unsupervised learning in deep neural…

Computer Vision and Pattern Recognition · Computer Science 2017-03-21 Yao-Hung Hubert Tsai , Liang-Kang Huang , Ruslan Salakhutdinov

Embedding models have been crucial in enabling various downstream tasks such as semantic similarity, information retrieval, and clustering. Recently, there has been a surge of interest in developing universal text embedding models that can…

Computer Vision and Pattern Recognition · Computer Science 2025-01-03 Ziyan Jiang , Rui Meng , Xinyi Yang , Semih Yavuz , Yingbo Zhou , Wenhu Chen

Information retrieval (IR) is essential in biomedical knowledge acquisition and clinical decision support. While recent progress has shown that language model encoders perform better semantic retrieval, training such models requires…

Information Retrieval · Computer Science 2024-01-17 Qiao Jin , Won Kim , Qingyu Chen , Donald C. Comeau , Lana Yeganova , W. John Wilbur , Zhiyong Lu

Foundation models trained on patient electronic health records (EHRs) require tokenizing medical data into sequences of discrete vocabulary items. Existing tokenizers treat medical codes from EHRs as isolated textual tokens. However, each…

Computation and Language · Computer Science 2025-07-01 Xiaorui Su , Shvat Messica , Yepeng Huang , Ruth Johnson , Lukas Fesser , Shanghua Gao , Faryad Sahneh , Marinka Zitnik

Multimodal Large Language Models (MLLMs) have shown success in various general image processing tasks, yet their application in medical imaging is nascent, lacking tailored models. This study investigates the potential of MLLMs in improving…

Computer Vision and Pattern Recognition · Computer Science 2024-05-13 Ling Yang , Zhanyu Wang , Zhenghao Chen , Xinyu Liang , Luping Zhou

Vision-and-language multi-modal pretraining and fine-tuning have shown great success in visual question answering (VQA). Compared to general domain VQA, the performance of biomedical VQA suffers from limited data. In this paper, we propose…

Computer Vision and Pattern Recognition · Computer Science 2023-03-02 Zheng Yuan , Qiao Jin , Chuanqi Tan , Zhengyun Zhao , Hongyi Yuan , Fei Huang , Songfang Huang

Recessive dystrophic epidermolysis bullosa (RDEB) is a rare genetic skin disorder for which clinicians greatly benefit from finding similar cases using images and clinical text. However, off-the-shelf foundation models do not reliably…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Fabian Kabus , Julia Hindel , Jelena Bratulić , Meropi Karakioulaki , Ayush Gupta , Cristina Has , Thomas Brox , Abhinav Valada , Harald Binder

Vision-and-language models (VLMs) have been increasingly explored in the medical domain, particularly following the success of CLIP in general domain. However, unlike the relatively straightforward pairing of 2D images and text, curating…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Ziyang Zhang , Yang Yu , Xulei Yang , Si Yong Yeo

Medical vision-language models show strong potential for joint reasoning over medical images and clinical text, but their performance often degrades under domain shift caused by variations in imaging devices, acquisition protocols, and…

Machine Learning · Computer Science 2026-02-23 Melika Filvantorkaman , Mohsen Piri

Masked image modeling (MIM) with transformer backbones has recently been exploited as a powerful self-supervised pre-training technique. The existing MIM methods adopt the strategy to mask random patches of the image and reconstruct the…

Computer Vision and Pattern Recognition · Computer Science 2024-02-05 Zhaohu Xing , Lei Zhu , Lequan Yu , Zhiheng Xing , Liang Wan

Biomedical text embeddings have primarily been developed using research literature from PubMed, yet clinical cardiology practice relies heavily on procedural knowledge and specialized terminology found in comprehensive textbooks rather than…

Computation and Language · Computer Science 2025-11-17 Richard J. Young , Alice M. Matthews

Multimodal learning leverages complementary information derived from different modalities, thereby enhancing performance in medical image segmentation. However, prevailing multimodal learning methods heavily rely on extensive well-annotated…

Computer Vision and Pattern Recognition · Computer Science 2024-09-05 Xiaogen Zhou , Yiyou Sun , Min Deng , Winnie Chiu Wing Chu , Qi Dou

Embedding models have become essential for retrieval-augmented generation (RAG) tasks, semantic clustering, and text re-ranking. But despite their growing use, many of these come with notable limitations. For example, Jina fails to capture…

Information Retrieval · Computer Science 2025-05-21 Anand Selvadurai , Jasheen Shaik , Girish Chandrasekar , ShriRadhaKrishnan Balamurugan , Eswara Reddy

We introduce Med-CTX, a fully transformer based multimodal framework for explainable breast cancer ultrasound segmentation. We integrate clinical radiology reports to boost both performance and interpretability. Med-CTX achieves exact…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Enobong Adahada , Isabel Sassoon , Kate Hone , Yongmin Li

Clinical decision-making relies on the integration of information across various data modalities, such as clinical time-series, medical images and textual reports. Compared to other domains, real-world medical data is heterogeneous in…

Image and Video Processing · Electrical Eng. & Systems 2025-08-14 Baraa Al Jorf , Farah Shamout

Existing zero-shot cross-lingual transfer methods rely on parallel corpora or bilingual dictionaries, which are expensive and impractical for low-resource languages. To disengage from these dependencies, researchers have explored training…

Computation and Language · Computer Science 2022-10-19 Kunbo Ding , Weijie Liu , Yuejian Fang , Weiquan Mao , Zhe Zhao , Tao Zhu , Haoyan Liu , Rong Tian , Yiren Chen

Multi-modal embeddings form the foundation for vision-language models, such as CLIP embeddings, the most widely used text-image embeddings. However, these embeddings are vulnerable to subtle misalignment of cross-modal features, resulting…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Yilin Ye , Shishi Xiao , Xingchen Zeng , Wei Zeng

The key challenge in unaligned multimodal language sequences lies in effectively integrating information from various modalities to obtain a refined multimodal joint representation. Recently, the disentangle and fuse methods have achieved…

Computation and Language · Computer Science 2024-09-20 Fan Qian , Jiqing Han , Jianchen Li , Yongjun He , Tieran Zheng , Guibin Zheng

Visual embedding models excel at zero-shot tasks like visual retrieval and classification. However, these models cannot be used for tasks that contain ambiguity or require user instruction. These tasks necessitate an embedding model which…

Computer Vision and Pattern Recognition · Computer Science 2025-08-22 Benjamin Schneider , Florian Kerschbaum , Wenhu Chen