Related papers: Foundation Models and Information Retrieval in Dig…
The large scale of scholarly publications poses a challenge for scholars in information seeking and sensemaking. Bibliometrics, information retrieval (IR), text mining and NLP techniques could help in these search and look-up activities,…
Artificial intelligence (AI) and Machine Learning (ML) have shown great potential in improving the medical imaging workflow, from image acquisition and reconstruction to disease diagnosis and treatment. Particularly, in recent years, there…
Due to the exponential growth of big data in this digital era, an advanced method for effective information retrieval becomes essential. The basic objective of this paper is to propose a topology-based method for cognitive information…
This review paper explores recent advancements and emerging approaches in Information Retrieval (IR) applied to Natural Language Processing (NLP). We examine traditional IR models such as Boolean, vector space, probabilistic, and inference…
Deploying Large Language Models (LLMs) for healthcare question answering requires robust methods to ensure accuracy and reliability. This work introduces Query-Based Retrieval Augmented Generation (QB-RAG), a framework for enhancing…
Information Retrieval (IR) systems are crucial tools for users to access information, which have long been dominated by traditional methods relying on similarity matching. With the advancement of pre-trained language models, generative…
Driven by the recent advances in deep learning methods and, in particular, by the development of modern self-supervised learning algorithms, increased interest and efforts have been devoted to build foundation models (FMs) for medical…
The integration of Large Language Models (LLMs) into the drug discovery and development field marks a significant paradigm shift, offering novel methodologies for understanding disease mechanisms, facilitating drug discovery, and optimizing…
As a primary means of information acquisition, information retrieval (IR) systems, such as search engines, have integrated themselves into our daily lives. These systems also serve as components of dialogue, question-answering, and…
Representing systems using the SAPPhIRE causality model is found useful in supporting design-by-analogy. However, creating a SAPPhIRE model of artificial or biological systems is an effort-intensive process that requires human experts to…
Large language models (LLMs) have recently become the leading source of answers for users' questions online. Despite their ability to offer eloquent answers, their accuracy and reliability can pose a significant challenge. This is…
Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…
Curation of biomedical knowledge bases (KBs) relies on extracting accurate multi-entity relational facts from the literature - a process that remains largely manual and expert-driven. An essential step in this workflow is retrieving…
Despite the transformative impact of Artificial Intelligence (AI) across various sectors, cyber security continues to rely on traditional static and dynamic analysis tools, hampered by high false positive rates and superficial code…
Digital libraries maintain extensive collections of knowledge and need to provide effective access paths for their users. For instance, PubPharm, the specialized information service for Pharmacy in Germany, provides and develops access…
The emergence of foundation models in computational pathology has transformed histopathological image analysis, with whole slide imaging (WSI) diagnosis being a core application. Traditionally, weakly supervised fine-tuning via multiple…
Cyber timeline analysis, or forensic timeline analysis, is crucial in Digital Forensics and Incident Response (DFIR). It examines artefacts and events particularly timestamps and metadata to detect anomalies, establish correlations, and…
The rise of Generative AI Search is fundamentally transforming how users and intelligent systems interact with the Internet. LLMs increasingly act as intermediaries between humans and web information. Yet the web remains optimized for human…
Abundant accumulation of digital histopathological images has led to the increased demand for their analysis, such as computer-aided diagnosis using machine learning techniques. However, digital pathological images and related tasks have…
The increasing volume of scholarly publications requires advanced tools for efficient knowledge discovery and management. This paper introduces ongoing work on a system using Large Language Models (LLMs) for the semantic extraction of key…