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Neuroscience research publications encompass a vast wealth of knowledge. Accurately retrieving existing information and discovering new insights from this extensive literature is essential for advancing the field. However, when knowledge is…

Computation and Language · Computer Science 2025-10-28 Pralaypati Ta , Sriram Venkatesaperumal , Keerthi Ram , Mohanasankar Sivaprakasam

Representing knowledge as high-dimensional vectors in a continuous semantic vector space can help overcome the brittleness and incompleteness of traditional knowledge bases. We present a method for performing deductive reasoning directly in…

Artificial Intelligence · Computer Science 2017-07-12 Douglas Summers-Stay

Large language models have achieved near-expert performance in structured reasoning domains like mathematics and programming, yet their ability to perform compositional multi-hop reasoning in specialized scientific fields remains limited.…

Artificial Intelligence · Computer Science 2026-03-09 Yuval Kansal , Niraj K. Jha

Literature-based knowledge discovery process identifies the important but implicit relations among information embedded in published literature. Existing techniques from Information Retrieval and Natural Language Processing attempt to…

Social and Information Networks · Computer Science 2019-11-12 Nazim Choudhury , Fahim Faisal , Matloob Khushi

Stratifying cancer patients based on their gene expression levels allows improving diagnosis, survival analysis and treatment planning. However, such data is extremely highly dimensional as it contains expression values for over 20000 genes…

Knowledge graphs represent the meaning of properties of real-world entities and relationships among them in a natural way. Exploiting semantics encoded in knowledge graphs enables the implementation of knowledge-driven tasks such as…

Digital Libraries · Computer Science 2018-07-19 Sahar Vahdati , Guillermo Palma , Rahul Jyoti Nath , Christoph Lange , Sören Auer , Maria-Esther Vidal

As generative models become powerful, concerns around transparency, accountability, and copyright violations have intensified. Understanding how specific training data contributes to a model's output is critical. We introduce a framework…

Artificial Intelligence · Computer Science 2025-12-03 Theodoros Aivalis , Iraklis A. Klampanos , Antonis Troumpoukis , Joemon M. Jose

A scientific paper can be divided into two major constructs which are Metadata and Full-body text. Metadata provides a brief overview of the paper while the Full-body text contains key-insights that can be valuable to fellow researchers. To…

Digital Libraries · Computer Science 2023-08-28 Azanzi Jiomekong , Sanju Tiwari

Technology convergence integrates distinct domains to create novel combinations, driving radical innovation that reshapes markets and industries. However, most approaches rely on pairwise networks that cannot capture multi-technology…

Physics and Society · Physics 2026-02-27 Yiwei Huang , Shuqi Xu , Shimin Cai , Linyuan Lü

Machine learning about language can be improved by supplying it with specific knowledge and sources of external information. We present here a new version of the linked open data resource ConceptNet that is particularly well suited to be…

Computation and Language · Computer Science 2018-12-12 Robyn Speer , Joshua Chin , Catherine Havasi

Machine learning on graph-structured data has recently become a major topic in industry and research, finding many exciting applications such as recommender systems and automated theorem proving. We propose an energy-based graph embedding…

Machine Learning · Computer Science 2023-08-25 Dominik Dold , Josep Soler Garrido

This study introduces a generative imputation model leveraging graph attention networks and tabular diffusion models for completing missing parametric data in engineering designs. This model functions as an AI design co-pilot, providing…

Machine Learning · Computer Science 2024-06-19 Rui Zhou , Chenyang Yuan , Frank Permenter , Yanxia Zhang , Nikos Arechiga , Matt Klenk , Faez Ahmed

Knowledge graph technology is considered a powerful and semantically enabled solution to link entities, allowing users to derive new knowledge by reasoning data according to various types of reasoning rules. However, in building such a…

Artificial Intelligence · Computer Science 2022-11-14 Yuanyuan Tian , Wenwen Li

Graph neural networks (GNNs), as topology/structure-aware models within deep learning, have emerged as powerful tools for AI-aided drug discovery (AIDD). By directly operating on molecular graphs, GNNs offer an intuitive and expressive…

Biomolecules · Quantitative Biology 2025-06-10 Odin Zhang , Haitao Lin , Xujun Zhang , Xiaorui Wang , Zhenxing Wu , Qing Ye , Weibo Zhao , Jike Wang , Kejun Ying , Yu Kang , Chang-yu Hsieh , Tingjun Hou

Gene Ontology (GO) is the primary gene function knowledge base that enables computational tasks in biomedicine. The basic element of GO is a term, which includes a set of genes with the same function. Existing research efforts of GO mainly…

Artificial Intelligence · Computer Science 2022-06-27 Fenglin Liu , Bang Yang , Chenyu You , Xian Wu , Shen Ge , Adelaide Woicik , Sheng Wang

Taiwanese China Studies (CS) has developed into a rich, interdisciplinary research field shaped by the unique geopolitical position and long standing academic engagement with Mainland China. This study responds to the growing need to…

Artificial Intelligence · Computer Science 2025-05-16 Hsuan-Lei Shao

In clinical artificial intelligence (AI), graph representation learning, mainly through graph neural networks (GNNs), stands out for its capability to capture intricate relationships within structured clinical datasets. With diverse data --…

Machine Learning · Computer Science 2023-12-13 Ruth Johnson , Michelle M. Li , Ayush Noori , Owen Queen , Marinka Zitnik

Graphs are a fundamental abstraction for modeling relational data. However, graphs are discrete and combinatorial in nature, and learning representations suitable for machine learning tasks poses statistical and computational challenges. In…

Machine Learning · Statistics 2019-05-16 Aditya Grover , Aaron Zweig , Stefano Ermon

This study proposed a knowledge graph entity extraction and relationship reasoning algorithm based on a graph neural network, using a graph convolutional network and graph attention network to model the complex structure in the knowledge…

Computation and Language · Computer Science 2024-11-26 Junliang Du , Guiran Liu , Jia Gao , Xiaoxuan Liao , Jiacheng Hu , Linxiao Wu

We present a method for finding hierarchy-aware embeddings of knowledge graphs (KGs) using graph neural networks (GNNs) enriched with a semantic loss derived from underlying ontologies. This method yields embeddings that better reflect…

Machine Learning · Computer Science 2026-05-21 Filip Kronström , Alexander H. Gower , Daniel Brunnsåker , Ievgeniia A. Tiukova , Ross D. King
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