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Deep learning networks excel at classification, yet identifying minimal architectures that reliably solve a task remains challenging. We present a computational methodology for systematically exploring and analyzing the relationships among…

Machine Learning · Computer Science 2026-01-27 Ziwei Zheng , Huizhi Liang , Vaclav Snasel , Vito Latora , Panos Pardalos , Giuseppe Nicosia , Varun Ojha

We present a formalism for Petri nets based on polynomial-style finite-set configurations and etale maps. The formalism supports both a geometric semantics in the style of Goltz and Reisig (processes are etale maps from graphs) and an…

Logic in Computer Science · Computer Science 2023-01-06 Joachim Kock

Symmetry -- invariance to certain operators -- is a fundamental concept in many branches of physics. We propose ways to measure symmetric properties of vertices, and their surroundings, in networks. To be stable to the randomness inherent…

Disordered Systems and Neural Networks · Physics 2008-06-29 Petter Holme

Motivation: Biological Petri Nets (Bio-PNs) model biochemical pathways where multiple reactions simultaneously affect shared metabolites through convergent production or regulatory coupling. However, classical Petri net independence theory…

Molecular Networks · Quantitative Biology 2025-12-22 Eugenio Simao

In process discovery, the goal is to find, for a given event log, the model describing the underlying process. While process models can be represented in a variety of ways, Petri nets form a theoretically well-explored description language…

Databases · Computer Science 2026-04-08 Lisa Luise Mannel , Wil M. P. van der Aalst

We propose fluid equivalences to compare and reduce behaviour of labeled fluid stochastic Petri nets (LFSPNs) while preserving their discrete and continuous properties. We define a linear-time relation of fluid trace equivalence and its…

Logic in Computer Science · Computer Science 2017-06-09 Igor V. Tarasyuk , Peter Buchholz

Percolation on complex networks is used both as a model for dynamics on networks, such as network robustness or epidemic spreading, and as a benchmark for our models of networks, where our ability to predict percolation measures our ability…

Physics and Society · Physics 2019-08-21 Laurent Hébert-Dufresne , Antoine Allard

Network science provides valuable insights across numerous disciplines including sociology, biology, neuroscience and engineering. A task of major practical importance in these application domains is inferring the network structure from…

Machine Learning · Computer Science 2019-05-01 Vassilis N. Ioannidis , Yanning Shen , Georgios B. Giannakis

The execution of different cases of a process is often restricted by inter-case dependencies through e.g., queueing or shared resources. Various high-level Petri net formalisms have been proposed that are able to model and analyze…

Formal Languages and Automata Theory · Computer Science 2023-04-12 Dominique Sommers , Natalia Sidorova , Boudewijn F. van Dongen

Petri networks and network models are two frameworks for the compositional design of systems of interacting entities. Here we show how to combine them using the concept of a "catalyst": an entity that is neither destroyed nor created by any…

Category Theory · Mathematics 2024-08-07 John C. Baez , John Foley , Joe Moeller

In this paper we introduce the notion of spread net. Spread nets are (safe) Petri nets equipped with vector clocks on places and with ticking functions on transitions, and are such that vector clocks are consistent with the ticking of…

Logic in Computer Science · Computer Science 2018-10-19 Eric Fabre , G. Michele Pinna

This paper presents a novel framework for the modeling of biological networks. It makes use of recent tools analyzing the robust satisfaction of properties of (hybrid) dynamical systems. The main challenge of this approach as applied to…

Computational Engineering, Finance, and Science · Computer Science 2012-08-22 Nicolas Mobilia , Alexandre Donzé , Jean Marc Moulis , Éric Fanchon

Classical Petri nets provide a canonical model of concurrency, with unfolding semantics linking nets, occurrence nets, and event structures. No comparable framework exists for quantum concurrency: existing ''quantum Petri nets'' lack…

Logic in Computer Science · Computer Science 2025-09-18 Julien Saan Joachim , Marc de Visme , Stefan Haar , Glynn Winskel

For a large Markovian model, a "product form" is an explicit description of the steady-state behaviour which is otherwise generally untractable. Being first introduced in queueing networks, it has been adapted to Markovian Petri nets. Here…

Discrete Mathematics · Computer Science 2012-04-17 Serge Haddad , Jean Mairesse , Hoang-Thach Nguyen

We systematically investigate the intricate interplay between short-range fermion-fermion interactions and disorder scatterings beneath the superconducting dome of noncentrosymmetric nodal-line superconductors. Employing the renormalization…

Superconductivity · Physics 2024-07-17 Wen-Hao Bian , Jing Wang

Petri nets are a formalism for modelling and reasoning about the behaviour of distributed systems. Recently, a reversible approach to Petri nets, Reversing Petri Nets (RPN), has been proposed, allowing transitions to be reversed…

Logic in Computer Science · Computer Science 2019-05-30 Anna Philippou , Kyriaki Psara , Harun Siljak

In this paper, we consider a family of seamlessly coupled nonlocal models associated with transmission conditions across an interface. The models are derived from the variation of a parameterized family of energies consisting of a…

Analysis of PDEs · Mathematics 2025-09-30 Qiang Du , Zhaolong Han , Tadele Mengesha , James M. Scott , Xiaochuan Tian

Network flow is a powerful mathematical framework to systematically explore the relationship between structure and function in biological, social, and technological networks. We introduce a new pipelining model of flow through networks…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Lavanya Marla , Lav R. Varshney , Devavrat Shah , Nirmal A. Prakash , Michael E. Gale

This paper is a study of fine-tuning of BERT contextual representations, with focus on commonly observed instabilities in few-sample scenarios. We identify several factors that cause this instability: the common use of a non-standard…

Computation and Language · Computer Science 2021-03-12 Tianyi Zhang , Felix Wu , Arzoo Katiyar , Kilian Q. Weinberger , Yoav Artzi

In this study, we investigate the complexity of two-phase flow (air/water) in a heterogeneous soil sample by using complex network theory, where the supposed porous media is non-deformable media, under the time-dependent gas pressure. Based…

Computational Engineering, Finance, and Science · Computer Science 2010-08-11 Hamed. O. Ghaffari , Mamdou Fall , Erman. Evgin