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Graph Transformers typically rely on explicit positional or structural encodings and dense global attention to incorporate graph topology. In this work, we show that neither is essential. We introduce HopFormer, a graph Transformer that…

Machine Learning · Computer Science 2026-02-03 Sanggeon Yun , Raheeb Hassan , Ryozo Masukawa , Sungheon Jeong , Mohsen Imani

Most existing transformer based video instance segmentation methods extract per frame features independently, hence it is challenging to solve the appearance deformation problem. In this paper, we observe the temporal information is…

Computer Vision and Pattern Recognition · Computer Science 2023-01-24 Zhenghao Zhang , Fangtao Shao , Zuozhuo Dai , Siyu Zhu

The self-attention mechanism in Transformer architecture, invariant to sequence order, necessitates positional embeddings to encode temporal order in time series prediction. We argue that this reliance on positional embeddings restricts the…

Machine Learning · Computer Science 2024-08-21 Yongbo Yu , Weizhong Yu , Feiping Nie , Xuelong Li

Neural networks can be successfully used to improve several modules of advanced video coding schemes. In particular, compression of colour components was shown to greatly benefit from usage of machine learning models, thanks to the design…

Image and Video Processing · Electrical Eng. & Systems 2021-02-10 Marc Górriz , Saverio Blasi , Alan F. Smeaton , Noel E. O'Connor , Marta Mrak

Crystal structure prediction algorithms have become powerful tools for materials discovery in recent years, however, they are usually limited to relatively small systems. The main challenge is that the number of local minima grows…

Materials Science · Physics 2022-02-09 Hao Gao , Junjie Wang , Yu Han , Jian Sun

Generative models trained on public databases of protein structures, most of which have been determined by X-ray crystallography, now provide powerful priors for structure prediction. However, they are not readily conditioned on the…

Machine Learning · Computer Science 2026-05-18 Minseo Kim , Huanghao Mai , Jay Shenoy , Alec Follmer , Gordon Wetzstein , Frederic Poitevin

Supervised learning with deep models has tremendous potential for applications in materials science. Recently, graph neural networks have been used in this context, drawing direct inspiration from models for molecules. However, materials…

Materials Science · Physics 2023-01-18 Sékou-Oumar Kaba , Siamak Ravanbakhsh

We incorporate Tensor-Product Representations within the Transformer in order to better support the explicit representation of relation structure. Our Tensor-Product Transformer (TP-Transformer) sets a new state of the art on the…

Machine Learning · Computer Science 2020-11-05 Imanol Schlag , Paul Smolensky , Roland Fernandez , Nebojsa Jojic , Jürgen Schmidhuber , Jianfeng Gao

Heavy computation is a bottleneck limiting deep-learningbased feature matching algorithms to be applied in many realtime applications. However, existing lightweight networks optimized for Euclidean data cannot address classical feature…

Computer Vision and Pattern Recognition · Computer Science 2023-03-13 Xiaoyong Lu , Yaping Yan , Bin Kang , Songlin Du

Crystal Structure Prediction (CSP) remains a fundamental challenge with significant implications for the development of new materials and the advancement of various scientific disciplines. Recent developments have shown that generative…

Computational Engineering, Finance, and Science · Computer Science 2025-09-01 Yang Liu , Chuan Zhou , Shuai Zhang , Peng Zhang , Xixun Lin , Shirui Pan

In this paper, we propose an extension to Longformer Encoder-Decoder, a popular sparse transformer architecture. One common challenge with sparse transformers is that they can struggle with encoding of long range context, such as…

Computation and Language · Computer Science 2024-10-14 Evan Lucas , Dylan Kangas , Timothy C Havens

Symbolic music generation aims to generate music scores automatically. A recent trend is to use Transformer or its variants in music generation, which is, however, suboptimal, because the full attention cannot efficiently model the…

Sound · Computer Science 2022-11-01 Botao Yu , Peiling Lu , Rui Wang , Wei Hu , Xu Tan , Wei Ye , Shikun Zhang , Tao Qin , Tie-Yan Liu

Recently, the remarkable capabilities of large language models (LLMs) have been illustrated across a variety of research domains such as natural language processing, computer vision, and molecular modeling. We extend this paradigm by…

Machine Learning · Computer Science 2023-09-04 Hongshuo Huang , Rishikesh Magar , Changwen Xu , Amir Barati Farimani

Graph Transformers have garnered significant attention for learning graph-structured data, thanks to their superb ability to capture long-range dependencies among nodes. However, the quadratic space and time complexity hinders the…

Information Retrieval · Computer Science 2024-05-08 Huiyuan Chen , Zhe Xu , Chin-Chia Michael Yeh , Vivian Lai , Yan Zheng , Minghua Xu , Hanghang Tong

The large amount of powder diffraction data for which the corresponding crystal structures have not yet been identified suggests the existence of numerous undiscovered, physically relevant crystal structure prototypes. In this paper, we…

Materials Science · Physics 2024-10-31 Abhijith S. Parackal , Rhys E. A. Goodall , Felix A. Faber , Rickard Armiento

Transformer architectures have revolutionized artificial intelligence (AI) through their attention mechanisms, yet the computational principles underlying their success remain opaque. We present a novel theoretical framework that…

Machine Learning · Computer Science 2026-05-07 Mu Qiao

Recently, radical progress in machine learning (ML) has revolutionized computational materials science, enabling unprecedentedly rapid materials discovery and property prediction, but the quantum many-body problem -- which is the key to…

Materials Science · Physics 2025-07-09 Bowen Hou , Xian Xu , Jinyuan Wu , Diana Y. Qiu

Time series forecasting is a crucial challenge with significant applications in areas such as weather prediction, stock market analysis, and scientific simulations. This paper introduces an embedded decomposed transformer, 'EDformer', for…

Machine Learning · Computer Science 2024-12-18 Sanjay Chakraborty , Ibrahim Delibasoglu , Fredrik Heintz

As Transformer-based models have achieved impressive performance on various time series tasks, Long-Term Series Forecasting (LTSF) tasks have also received extensive attention in recent years. However, due to the inherent computational…

Machine Learning · Computer Science 2024-02-06 Daojun Liang , Haixia Zhang , Dongfeng Yuan , Xiaoyan Ma , Dongyang Li , Minggao Zhang

Molecular property prediction is crucial for drug discovery when labeled data are scarce. This work presents CardinalGraphFormer, a graph transformer augmented with a query-conditioned cardinality-preserving attention (CPA) channel that…

Machine Learning · Computer Science 2026-02-19 Abhijit Gupta