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There are various approaches to graph learning for data clustering, incorporating different spectral and structural constraints through diverse graph structures. Some methods rely on bipartite graph models, where nodes are divided into two…

Machine Learning · Computer Science 2025-05-14 Amirhossein Javaheri , Daniel P. Palomar

The $k$-defective clique model relaxes the strict completeness constraint of the traditional clique by allowing up to $k$ missing edges, providing a robust formulation for detecting cohesive structures in noisy graphs. Consequently, the…

Databases · Computer Science 2026-05-19 Kewu Yang , Kaiqiang Yu , Shengxin Liu , Zhaoquan Gu

Microarray techniques are widely used in Gene expression analysis. These techniques are based on discovering submatrices of genes that share similar expression patterns across a set of experimental conditions with coherence constraint.…

Quantitative Methods · Quantitative Biology 2020-01-27 Bilal Taher , Muhammad. H Fares , Saeed Jalili

Given a bipartite graph, the maximum balanced biclique (\textsf{MBB}) problem, discovering a mutually connected while equal-sized disjoint sets with the maximum cardinality, plays a significant role for mining the bipartite graph and has…

Data Structures and Algorithms · Computer Science 2020-07-20 Lu Chen , Chengfei Liu , Rui Zhou , Jiajie Xu , Jianxin Li

Given a graph, the sparsest cut problem asks for a subset of vertices whose edge expansion (the normalized cut given by the subset) is minimized. In this paper, we study a generalization of this problem seeking for $ k $ disjoint subsets of…

Data Structures and Algorithms · Computer Science 2017-02-21 Ramin Javadi , Saleh Ashkboos

Biclustering algorithms play a central role in the biotechnological and biomedical domains. The knowledge extracted supports the extraction of putative regulatory modules, essential to understanding diseases, aiding therapy research, and…

Databases · Computer Science 2022-12-13 Leonardo Alexandre , Rafael S. Costa , Rui Henriques

The problem of estimating the number of clusters (say k) is one of the major challenges for the partitional clustering. This paper proposes an algorithm named k-SCC to estimate the optimal k in categorical data clustering. For the…

Machine Learning · Computer Science 2025-01-28 Duy-Tai Dinh , Tsutomu Fujinami , Van-Nam Huynh

The minimum sum-of-squares clustering (MSSC), or k-means type clustering, has been recently extended to exploit prior knowledge on the cardinality of each cluster. Such knowledge is used to increase performance as well as solution quality.…

Optimization and Control · Mathematics 2023-10-13 Veronica Piccialli , Antonio M. Sudoso

We study the set of all decompositions (clusterings) of a graph through its characterization as a set of lifted multicuts. This leads us to practically relevant insights related to the definition of a class of decompositions by must-join…

Discrete Mathematics · Computer Science 2017-06-09 Andrea Horňáková , Jan-Hendrik Lange , Bjoern Andres

Clustering is an unsupervised technique of Data Mining. It means grouping similar objects together and separating the dissimilar ones. Each object in the data set is assigned a class label in the clustering process using a distance measure.…

Information Retrieval · Computer Science 2011-10-13 Parul Agarwal , M. Afshar Alam , Ranjit Biswas

We present an algorithm for recovering planted solutions in two well-known models, the stochastic block model and planted constraint satisfaction problems, via a common generalization in terms of random bipartite graphs. Our algorithm…

Data Structures and Algorithms · Computer Science 2015-04-30 Vitaly Feldman , Will Perkins , Santosh Vempala

A balanced partition is a clustering of a graph into a given number of equal-sized parts. For instance, the Bisection problem asks to remove at most k edges in order to partition the vertices into two equal-sized parts. We prove that…

Discrete Mathematics · Computer Science 2016-01-12 René van Bevern , Andreas Emil Feldmann , Manuel Sorge , Ondřej Suchý

An ordered biclique partition of the complete graph $K_n$ on $n$ vertices is a collection of bicliques (i.e., complete bipartite graphs) such that (i) every edge of $K_n$ is covered by at least one and at most two bicliques in the…

Computational Complexity · Computer Science 2013-12-30 Manami Shigeta , Kazuyuki Amano

Mining cohesive subgraphs from a graph is a fundamental problem in graph data analysis. One notable cohesive structure is $\gamma$-quasi-clique (QC), where each vertex connects at least a fraction $\gamma$ of the other vertices inside.…

Databases · Computer Science 2023-08-29 Kaiqiang Yu , Cheng Long

We propose a method for low-rank semidefinite programming in application to the semidefinite relaxation of unconstrained binary quadratic problems. The method improves an existing solution of the semidefinite programming relaxation to…

Optimization and Control · Mathematics 2021-12-07 Roman Pogodin , Mikhail Krechetov , Yury Maximov

In the family of clustering problems, we are given a set of objects (vertices of the graph), together with some observed pairwise similarities (edges). The goal is to identify clusters of similar objects by slightly modifying the graph to…

Data Structures and Algorithms · Computer Science 2013-06-18 Anudhyan Boral , Marek Cygan , Tomasz Kociumaka , Marcin Pilipczuk

This paper proposes a Mixed-Integer Linear Programming approach for the Soft Graph Clustering Problem. This is the first method that simultaneously allocates membership proportion for vertices that lie in multiple clusters, and that…

Discrete Mathematics · Computer Science 2019-06-13 Vicky Mak-Hau , John Yearwood

We propose a graph clustering formulation based on multicut (a.k.a. weighted correlation clustering) on the complete graph. Our formulation does not need specification of the graph topology as in the original sparse formulation of multicut,…

Computer Vision and Pattern Recognition · Computer Science 2023-06-06 Ahmed Abbas , Paul Swoboda

We study the clustering of bipartite graphs and Boolean matrix factorization in data streams. We consider a streaming setting in which the vertices from the left side of the graph arrive one by one together with all of their incident edges.…

Machine Learning · Computer Science 2020-12-08 Stefan Neumann , Pauli Miettinen

One of the most useful measures of cluster quality is the modularity of a partition, which measures the difference between the number of the edges joining vertices from the same cluster and the expected number of such edges in a random…

Data Analysis, Statistics and Probability · Physics 2009-09-29 Hristo Djidjev