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Recently a new feature representation and data analysis methodology based on a topological tool called persistent homology (and its corresponding persistence diagram summary) has started to attract momentum. A series of methods have been…

Computational Geometry · Computer Science 2019-12-13 Qi Zhao , Yusu Wang

This paper tackles the problem of coefficient field choice in persistent homology. When we compute a persistence diagram, we need to select a coefficient field before computation. We should understand the dependency of the diagram on the…

Algebraic Topology · Mathematics 2020-11-18 Ippei Obayashi , Michio Yoshiwaki

One-dimensional persistent homology is arguably the most important and heavily used computational tool in topological data analysis. Additional information can be extracted from datasets by studying multi-dimensional persistence modules and…

Algebraic Topology · Mathematics 2023-08-31 Facundo Mémoli , Anastasios Stefanou , Ling Zhou

In recent years, persistence modules have been viewed as graded modules with gradation over a preordered set serving as the indexing set. We provide sufficient criteria for a projective module over a PID to be free when the indexing set is…

Algebraic Topology · Mathematics 2026-03-04 Prateep Chakraborty , Giriraj Ghosh

Persistent homology is a natural tool for probing the topological characteristics of weighted graphs, essentially focusing on their $0$-dimensional homology. While this area has been substantially studied, we present a new approach to…

Algebraic Topology · Mathematics 2023-10-03 Omer Bobrowski , Primoz Skraba

The theory of multidimensional persistent homology was initially developed in the discrete setting, and involved the study of simplicial complexes filtered through an ordering of the simplices. Later, stability properties of…

Computational Geometry · Computer Science 2013-03-28 Niccolò Cavazza , Marc Ethier , Patrizio Frosini , Tomasz Kaczynski , Claudia Landi

In this paper, three Computational Topology methods (namely effective homology, persistent homology and discrete vector fields) are mixed together to produce algorithms for homological digital image processing. The algorithms have been…

Computer Vision and Pattern Recognition · Computer Science 2014-12-22 Ana Romero , Julio Rubio , Francis Sergeraert

Recently it has been shown that computing the dimension of the first homology group $H_1(K)$ of a simplicial $2$-complex $K$ embedded linearly in $\mathbb{R}^4$ is as hard as computing the rank of a sparse $0-1$ matrix. This puts a major…

Computational Geometry · Computer Science 2019-03-18 Tamal K. Dey

The Discrete Morse Theory of Forman appeared to be useful for providing filtration-preserving reductions of complexes in the study of persistent homology. So far, the algorithms computing discrete Morse matchings have only been used for…

Computational Geometry · Computer Science 2015-03-13 Madjid Allili , Tomasz Kaczynski , Claudia Landi

Topological data analysis combines machine learning with methods from algebraic topology. Persistent homology, a method to characterize topological features occurring in data at multiple scales is of particular interest. A major obstacle to…

Algebraic Topology · Mathematics 2019-04-25 Nello Blaser , Morten Brun

Persistence modules are a central algebraic object arising in topological data analysis. The notion of interleaving provides a natural way to measure distances between persistence modules. We consider various classes of persistence modules,…

Algebraic Topology · Mathematics 2019-12-12 Peter Bubenik , Tane Vergili

Persistence diagrams, combining geometry and topology for an effective shape description used in pattern recognition, have already proven to be an effective tool for shape representation with respect to a certainfiltering function.…

Algebraic Topology · Mathematics 2018-12-26 Alessia Angeli , Massimo Ferri , Ivan Tomba

We outline a novel clustering scheme for simplicial complexes that produces clusters of simplices in a way that is sensitive to the homology of the complex. The method is inspired by, and can be seen as a higher-dimensional version of,…

Machine Learning · Computer Science 2020-06-23 Stefania Ebli , Gard Spreemann

A topology preserving skeleton is a synthetic representation of an object that retains its topology and many of its significant morphological properties. The process of obtaining the skeleton, referred to as skeletonization or thinning, is…

Computer Vision and Pattern Recognition · Computer Science 2015-06-17 Paweł Dłotko , Ruben Specogna

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

The $\gamma$-linear projected barcode was recently introduced as an alternative to the well-known fibered barcode for multiparameter persistence, in which restrictions of the modules to lines are replaced by pushforwards of the modules…

Algebraic Topology · Mathematics 2024-08-05 Alex Fernandes , Steve Oudot , Francois Petit

In this paper, we consider topological featurizations of data defined over simplicial complexes, like images and labeled graphs, obtained by convolving this data with various filters before computing persistence. Viewing a convolution…

Algebraic Topology · Mathematics 2024-01-26 Elchanan Solomon , Paul Bendich

Compression aims to reduce the size of an input, while maintaining its relevant properties. For multi-parameter persistent homology, compression is a necessary step in any computational pipeline, since standard constructions lead to large…

Algebraic Topology · Mathematics 2022-08-17 Ulderico Fugacci , Michael Kerber , Alexander Rolle

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

Persistent homology is a multiscale method for analyzing the shape of sets and functions from point cloud data arising from an unknown distribution supported on those sets. When the size of the sample is large, direct computation of the…

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