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The $k$-defective clique model relaxes the strict completeness constraint of the traditional clique by allowing up to $k$ missing edges, providing a robust formulation for detecting cohesive structures in noisy graphs. Consequently, the…

Databases · Computer Science 2026-05-19 Kewu Yang , Kaiqiang Yu , Shengxin Liu , Zhaoquan Gu

We introduce and study a new optimization problem called Hyper Vertex Cover. This problem is a generalization of the standard vertex cover to hypergraphs: one seeks a configuration of particles with minimal density such that every hyperedge…

Statistical Mechanics · Physics 2009-11-13 M. Mézard , M. Tarzia

A (unit) disk graph is the intersection graph of closed (unit) disks in the plane. Almost three decades ago, an elegant polynomial-time algorithm was found for \textsc{Maximum Clique} on unit disk graphs [Clark, Colbourn, Johnson; Discrete…

Computational Geometry · Computer Science 2018-03-01 Édouard Bonnet , Panos Giannopoulos , Eun Jung Kim , Paweł Rzążewski , Florian Sikora

The maximum clique problem (MCP) is a fundamental problem in graph theory and in computational complexity. Given a graph G, the problem is that of finding the largest clique (complete subgraph) in G. The MCP has many important applications…

Neural and Evolutionary Computing · Computer Science 2024-09-30 Michael Vella , John Abela , Kristian Guillaumier

In the kernel density estimation (KDE) problem one is given a kernel $K(x, y)$ and a dataset $P$ of points in a Euclidean space, and must prepare a data structure that can quickly answer density queries: given a point $q$, output a…

Data Structures and Algorithms · Computer Science 2024-01-08 Moses Charikar , Michael Kapralov , Erik Waingarten

We present an efficient algorithm for the min-max correlation clustering problem. The input is a complete graph where edges are labeled as either positive $(+)$ or negative $(-)$, and the objective is to find a clustering that minimizes the…

Data Structures and Algorithms · Computer Science 2025-02-19 Nairen Cao , Steven Roche , Hsin-Hao Su

We consider the k-disjoint-clique problem. The input is an undirected graph G in which the nodes represent data items, and edges indicate a similarity between the corresponding items. The problem is to find within the graph k disjoint…

Optimization and Control · Mathematics 2013-12-03 Brendan P. W. Ames , Stephen A. Vavasis

The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…

Data Structures and Algorithms · Computer Science 2012-11-15 Bharath Pattabiraman , Md. Mostofa Ali Patwary , Assefaw H. Gebremedhin , Wei-keng Liao , Alok Choudhary

Markov chain Monte Carlo (MCMC) is an established approach for uncertainty quantification and propagation in scientific applications. A key challenge in applying MCMC to scientific domains is computation: the target density of interest is…

Machine Learning · Statistics 2022-10-05 Diana Cai , Ryan P. Adams

Detecting dense subgraphs from large graphs is a core component in many applications, ranging from social networks mining, bioinformatics. In this paper, we focus on mining dense subgraphs in a bipartite graph. The work is motivated by the…

Data Structures and Algorithms · Computer Science 2018-11-06 Yikun Ban

Chordal decomposition techniques are used to reduce large structured positive semidefinite matrix constraints in semidefinite programs (SDPs). The resulting equivalent problem contains multiple smaller constraints on the nonzero blocks (or…

Optimization and Control · Mathematics 2020-09-10 Michael Garstka , Mark Cannon , Paul Goulart

The quantum query complexity of subgraph-containment problems, which ask whether a given subgraph $H$ is present in an input graph $G$, has been the subject of considerable study. However, even for relatively simple subgraphs, such as paths…

Quantum Physics · Physics 2026-05-12 Arjan Cornelissen , Amin Shiraz Gilani , Subhasree Patro

As massive graphs become more prevalent, there is a rapidly growing need for scalable algorithms that solve classical graph problems, such as maximum matching and minimum vertex cover, on large datasets. For massive inputs, several…

Data Structures and Algorithms · Computer Science 2018-12-31 Sepehr Assadi , MohammadHossein Bateni , Aaron Bernstein , Vahab Mirrokni , Cliff Stein

We present a new approach for improving motif scanning accuracy, based on analysis of in-between similarity. Given a set of motifs obtained from a scanning process, we construct an associated weighted graph. We also compute the expected…

Quantitative Methods · Quantitative Biology 2022-03-23 Braslav Rabar , Keti Nižetić , Pavle Goldstein

Consider a generalization of the classical binary search problem in linearly sorted data to the graph-theoretic setting. The goal is to design an adaptive query algorithm, called a strategy, that identifies an initially unknown target…

Data Structures and Algorithms · Computer Science 2020-05-04 Dariusz Dereniowski , Aleksander Łukasiewicz , Przemysław Uznański

Graph clustering is a challenging pattern recognition problem whose goal is to identify vertex partitions with high intra-group connectivity. This paper investigates a bi-objective problem that maximizes the number of intra-cluster edges of…

Social and Information Networks · Computer Science 2019-09-10 Camila P. S. Tautenhain , Mariá C. V. Nascimento

In this paper, we propose a scaled gradient modified non-monotone line search method for solving constrained minimization problems, and explore several specific properties of this method, namely, its convergence analysis. We discuss the…

Optimization and Control · Mathematics 2026-05-01 Qamrul Hasan Ansari , Feeroz Babu , D. R. Sahu , Jen Chih Yao

Community search is a widely studied semi-supervised graph clustering problem, retrieving a high-quality connected subgraph containing the user-specified query vertex. However, existing methods primarily focus on cohesiveness within the…

Social and Information Networks · Computer Science 2025-08-05 Longlong Lin , Yue He , Wei Chen , Pingpeng Yuan , Rong-Hua Li , Tao Jia

Detecting if a graph contains a $k$-Clique is one of the most fundamental problems in computer science. The asymptotically fastest algorithm runs in time $O(n^{\omega k/3})$, where $\omega$ is the exponent of Boolean matrix multiplication.…

Data Structures and Algorithms · Computer Science 2024-08-06 Amir Abboud , Nick Fischer , Yarin Shechter

This manuscript provides a comprehensive review of the Maximum Clique Problem, a computational problem that involves finding subsets of vertices in a graph that are all pairwise adjacent to each other. The manuscript covers in a simple way…

Artificial Intelligence · Computer Science 2024-03-18 Raffaele Marino , Lorenzo Buffoni , Bogdan Zavalnij