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Previous work has explored the computational complexity of deriving two fundamental types of explanations for ML model predictions: (1) *sufficient reasons*, which are subsets of input features that, when fixed, determine a prediction, and…
While protein language models (PLMs) are one of the most promising avenues of research for future de novo protein design, the way in which they transform sequences to hidden representations, as well as the information encoded in such…
Modern NLP models rely heavily on engineered features, which often combine word and contextual information into complex lexical features. Such combination results in large numbers of features, which can lead to over-fitting. We present a…
There is a large ongoing scientific effort in mechanistic interpretability to map embeddings and internal representations of AI systems into human-understandable concepts. A key element of this effort is the linear representation…
Natural language processing (NLP) models trained on people-generated data can be unreliable because, without any constraints, they can learn from spurious correlations that are not relevant to the task. We hypothesize that enriching models…
In this study, we propose HOPER (HOlistic ProtEin Representation), a novel multimodal learning framework designed to enhance protein function prediction (PFP) in low-data settings. The challenge of predicting protein functions is compounded…
Named-entities are inherently multilingual, and annotations in any given language may be limited. This motivates us to consider polyglot named-entity recognition (NER), where one model is trained using annotated data drawn from more than…
In this work, we argue that large language models (LLMs), though trained to predict only the next token, exhibit emergent planning behaviors: $\textbf{their hidden representations encode future outputs beyond the next token}$. Through…
Model interpretability methods are often used to explain NLP model decisions on tasks such as text classification, where the output space is relatively small. However, when applied to language generation, where the output space often…
A better understanding of the emergent computation and problem-solving capabilities of recent large language models is of paramount importance to further improve them and broaden their applicability. This work investigates how a language…
Qualitative analysis of verbal data is of central importance in the learning sciences. It is labor-intensive and time-consuming, however, which limits the amount of data researchers can include in studies. This work is a step towards…
As language models (LMs) become more capable, it is increasingly important to align them with human preferences. However, the dominant paradigm for training Preference Models (PMs) for that purpose suffers from fundamental limitations, such…
With the widespread of digital environments, reliable authentication and continuous access control has become crucial. It can minimize cyber attacks and prevent frauds, specially those associated with identity theft. A particular interest…
State of the art Named Entity Recognition (NER) models have achieved an impressive ability to extract common phrases from text that belong to labels such as location, organization, time, and person. However, typical NER systems that rely on…
We seek to understand how the representations of individual tokens and the structure of the learned feature space evolve between layers in deep neural networks under different learning objectives. We focus on the Transformers for our…
Prior research has established associations between individuals' language usage and their personal traits; our linguistic patterns reveal information about our personalities, emotional states, and beliefs. However, with the increasing…
The linear subspace hypothesis (Bolukbasi et al., 2016) states that, in a language model's representation space, all information about a concept such as verbal number is encoded in a linear subspace. Prior work has relied on auxiliary…
Since first introduced, computer simulation has been an increasingly important tool in evolutionary linguistics. Recently, with the development of deep learning techniques, research in grounded language learning has also started to focus on…
Representation learning and \emph{de novo} generation of proteins are pivotal computational biology tasks. Whilst natural language processing (NLP) techniques have proven highly effective for protein sequence modelling, structure modelling…
Large Language Models (LLMs) typically represent numbers using multiple tokens, which requires the model to aggregate these tokens to interpret numerical values. This fragmentation makes both training and inference less efficient and…