English
Related papers

Related papers: Boundary geometry controls a topological defect tr…

200 papers

Organoids are in vitro cellular collectives from which brain-like, or gut-like, or kidney-like structures emerge. To make quantitative predictions regarding the morphology and rheology of a cellular collective in its initial stages of…

Soft Condensed Matter · Physics 2023-01-12 Tao Zhang , J. M. Schwarz

During the development of an organism, cells must coordinate and organize to generate the correct shape, structure, and spatial patterns of tissues and organs, a process known as morphogenesis. The morphogenesis of embryonic tissues is…

Tissues and Organs · Quantitative Biology 2026-04-28 Adrian Aguirre-Tamaral , Elisa Floris , Bernat Corominas-Murtra

Confined electronic states and optical transitions in 3D topological insulator nanoparticles have been studied in the literature, assuming idealized geometries such as spheres or infinitely long cylinders, that allow to obtain analytical…

Mesoscale and Nanoscale Physics · Physics 2022-03-03 Jorge David Castaño-Yepes , Enrique Muñoz

A hallmark feature of topologically ordered states of matter is the dependence of ground state degeneracy (GSD) on the topology of the manifold determined by the global shape of the system. Although the topology of a physical system is…

Strongly Correlated Electrons · Physics 2013-08-09 Andrej Mesaros , Yong Baek Kim , Ying Ran

Mechanochemical patterns arising in the actomyosin cortex drive many cellular processes. Here we consider a hydrodynamic model for the actomyosin cortex of cells and study the sensitivity of the emergent patterns to both physical parameters…

Statistical Mechanics · Physics 2025-03-03 Jigyasa Watwani , Sakshi Pahujani , V Jemseena , Vishal Vasan , K Vijay Kumar

An important open question in the modeling of biological tissues is how to identify the right scale for coarse-graining, or equivalently, the right number of degrees of freedom. For confluent biological tissues, both vertex and Voronoi…

Tissues and Organs · Quantitative Biology 2023-06-08 Elizabeth Lawson-Keister , Tao Zhang , M. Lisa Manning

Chiral condensed matter systems, such as liquid crystals and magnets, exhibit a host of spatially localized topological structures that emerge from the medium's tendency to twist and its competition with confinement and field coupling…

Soft Condensed Matter · Physics 2020-05-07 Jung-Shen B. Tai , Ivan I. Smalyukh

Biomembranes play a central role in various phenomena like locomotion of cells, cell-cell interactions, packaging of nutrients, and in maintaining organelle morphology and functionality. During these processes, the membranes undergo…

Quantitative Methods · Quantitative Biology 2021-12-01 Debabrata Auddya , Xiaoxuan Zhang , Rahul Gulati , Ritvik Vasan , Krishna Garikipati , Padmini Rangamani , Shiva Rudraraju

Biological active matter like the cytoskeleton or tissues are characterized by their ability to transform chemical energy into mechanical stress. In addition, it often exhibits orientational order, which is essential for many cellular and…

Biological Physics · Physics 2025-06-05 Ludovic Dumoulin , Carles Blanch-Mercader , Karsten Kruse

Mass flows and radial electric field driven by edge poloidal density asymmetries can be used as a highly effective control mechanism for the edge and thus global confinement in tokamaks. The underlying physics can be demonstrated entirely…

Plasma Physics · Physics 2018-05-29 A. Y. Aydemir

Topological defects in active polar fluids can organise spontaneous flows and influence macroscopic density patterns. Both of them play, for example, an important role during animal development. Yet the influence of density on active flows…

The tenfold classification provides a powerful framework for organizing topological phases of matter based on symmetry and spatial dimension. However, it does not offer a systematic method for transitioning between classes or engineering…

Mesoscale and Nanoscale Physics · Physics 2025-08-08 Amit Goft , Eric Akkermans

Topological defects are singularities in material fields that play a vital role across a range of systems: from cosmic microwave background polarization to superconductors, and biological materials. Although topological defects and their…

Soft Condensed Matter · Physics 2017-10-06 Luca Giomi , Žiga Kos , Miha Ravnik , Anupam Sengupta

Motivated by recent experiments on the rod-like virus bacteriophage fd, confined to circular and annular domains, we present a theoretical study of structural transitions in these geometries. Using the continuum theory of nematic liquid…

Soft Condensed Matter · Physics 2015-08-14 O. V. Manyuhina , K. B. Lawlor , M. C. Marchetti , M. J. Bowick

Many vertebrate motor and sensory systems decussate, or cross the midline to the opposite side of the body. The successful crossing of millions of axons during development requires a complex of tightly controlled regulatory processes.…

Neurons and Cognition · Quantitative Biology 2024-05-14 Troy Shinbrot , Wise Young

Nonlinear optical phenomena are generally governed by geometry in matter systems, as they depend on the spatial arrangement of atoms within materials or molecules. Metasurfaces, through precisely designed geometries on a subwavelength…

Recent experiments with degenerate molecular gases dressed by elliptically polarized microwave fields have enabled new control of dipolar interactions via engineered anisotropy. We reveal a symmetry structure of the dipolar interaction that…

Quantum Gases · Physics 2025-10-13 D. Baillie

For many materials, a precise knowledge of their dispersion spectra is insufficient to predict their ordered phases and physical responses. Instead, these materials are classified by the geometrical and topological properties of their…

Materials Science · Physics 2021-06-16 Qiong Ma , Adolfo G. Grushin , Kenneth S. Burch

The biological membrane, which compartmentalizes the cell and its organelles, exhibit wide variety of macroscopic shapes of varying morphology and topology. A systematic understanding of the relation of membrane shapes to composition,…

Biological Physics · Physics 2011-09-23 N. Ramakrishnan , P. B. Sunil Kumar , John H. Ipsen

Left-right axis specification establishes embryonic laterality through asymmetric signaling cascades originating at the cellular scale. We previously reported the presence of a directionality bias in confined pairs of endothelial (and…

Cell Behavior · Quantitative Biology 2026-03-31 Egun Im , Ghina Badih , Laetitia Kurzawa , Andreas Buttenschön , Calina Copos