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The conventional approach for analyzing gene expression data involves clustering algorithms. Cluster analyses provide partitioning of the set of genes that can predict biological classification based on its similarity in n-dimensional…

Molecular Networks · Quantitative Biology 2022-08-23 Jhoirene B. Clemente , Gabriel Besas , Jerick Callado , John Erol Evangelista

Dense subgraphs of sparse graphs (communities), which appear in most real-world complex networks, play an important role in many contexts. Computing them however is generally expensive. We propose here a measure of similarities between…

Disordered Systems and Neural Networks · Physics 2014-10-13 Matthieu Latapy , Pascal Pons

The problem and implications of community detection in networks have raised a huge attention, for its important applications in both natural and social sciences. A number of algorithms has been developed to solve this problem, addressing…

Social and Information Networks · Computer Science 2014-02-28 Cristian Bisconti , Angelo Corallo , Laura Fortunato , Antonio A. Gentile

In this article, we consider the problem of community detection in signed networks. We propose SignedLouvain, an adaptation of the Louvain method to maximise signed modularity, efficiently taking advantage of the structure induced by signed…

Social and Information Networks · Computer Science 2024-07-30 John N. Pougué-Biyong , Renaud Lambiotte

Community detection involves identifying natural divisions in networks, a crucial task for many large-scale applications. This report presents GVE-Louvain, one of the most efficient multicore implementations of the Louvain algorithm, a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-03 Subhajit Sahu

The existence of salient semantic clusters in the latent spaces of a neural network during training strongly correlates its final accuracy on classification tasks. This paper proposes a novel fine-tuning method that boosts performance by…

Machine Learning · Computer Science 2025-01-22 Cédric Ho Thanh

Researchers have designed many algorithms to measure the distances between graph nodes, such as average hitting times of random walks, cosine distances from DeepWalk, personalized PageRank, etc. Successful although these algorithms are,…

Discrete Mathematics · Computer Science 2020-12-02 Enzhi Li , Zhengyi Le

Given a graph of interactions, a module (also called a community or cluster) is a subset of nodes whose fitness is a function of the statistical significance of the pairwise interactions of nodes in the module. The topic of this paper is a…

Physics and Society · Physics 2018-08-20 Bhaskar DasGupta , Devendra Desai

In this paper we introduce and develop the concept of Interval-Weighted Networks (IWN), a novel approach in Social Network Analysis, where the edge weights are represented by closed intervals composed with precise information, comprehending…

Social and Information Networks · Computer Science 2021-06-21 Hélder Alves , Paula Brito , Pedro Campos

This paper addresses consensus optimization problems in a multi-agent network, where all agents collaboratively find a minimizer for the sum of their private functions. We develop a new decentralized algorithm in which each agent…

Optimization and Control · Mathematics 2019-07-03 Xianghui Mao , Kun Yuan , Yubin Hu , Yuantao Gu , Ali H. Sayed , Wotao Yin

In numerous networks, it is vital to identify communities consisting of closely joined groups of individuals. Such communities often reveal the role of the networks or primary properties of the individuals. In this perspective, Newman and…

Social and Information Networks · Computer Science 2025-04-15 Ghazal Ghajari , Hooshang Jazayeri-Rad , Mashalla Abbasi Dezfooli

The analysis and detection of communities in network structures are becoming increasingly relevant for understanding social behavior. One of the principal challenges in this field is the complexity of existing algorithms. The Girvan-Newman…

Social and Information Networks · Computer Science 2024-08-26 Julio-Omar Palacio-Niño , Fernando Berzal

The rise of graph data in various fields calls for efficient and scalable community detection algorithms. In this paper, we present parallel implementations of two widely used algorithms: Label Propagation and Louvain, specifically designed…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-03 Fuhuan Li , Zhihui Du , David A. Bader

The theory of rapid mixing random walks plays a fundamental role in the study of modern randomised algorithms. Usually, the mixing time is measured with respect to the worst initial position. It is well known that the presence of…

Probability · Mathematics 2024-01-30 Alberto Espuny Díaz , Patrick Morris , Guillem Perarnau , Oriol Serra

We introduce a new algorithm for modularity-based community detection in large networks. The algorithm, which we refer to as a smart local moving algorithm, takes advantage of a well-known local moving heuristic that is also used by other…

Physics and Society · Physics 2015-06-17 Ludo Waltman , Nees Jan van Eck

With the increasing relevance of large networks in important areas such as the study of contact networks for spread of disease, or social networks for their impact on geopolitics, it has become necessary to study machine learning tools that…

Social and Information Networks · Computer Science 2021-11-10 Aman Barot , Shankar Bhamidi , Souvik Dhara

The graph-theoretical task of determining most likely inter-community edges based on disconnected subgraphs' intra-community connectivity is proposed. An algorithm is developed for this edge augmentation task, based on elevating the zero…

Social and Information Networks · Computer Science 2022-07-13 Tianyi Li

In network research, Community Detection has always been a topic of significant interest in network science, with numerous papers and algorithms proposing to uncover the underlying structures within networks. In this paper, we conduct a…

Social and Information Networks · Computer Science 2025-02-10 Yash Malode , Amit Aylani , Arvind Bhardwaj , Deepak Hajoary

In this paper, we proposed a novel two-stage optimization method for network community partition, which is based on inherent network structure information. The introduced optimization approach utilizes the new network centrality measure of…

Social and Information Networks · Computer Science 2019-07-16 Yiguang Bai , Sanyang Liu , Ke Yin , Jing Yuan

Spectral clustering is one of the most popular methods for community detection in graphs. A key step in spectral clustering algorithms is the eigen decomposition of the $n{\times}n$ graph Laplacian matrix to extract its $k$ leading…

Machine Learning · Statistics 2018-09-10 Muni Sreenivas Pydi , Ambedkar Dukkipati