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Protocol standardization and sharing are crucial for reproducibility in life sciences. In spite of numerous efforts for standardized protocol description, adherence to these standards in literature remains largely inconsistent. Curation of…

Quantitative Methods · Quantitative Biology 2023-12-12 Shuo Jiang , Daniel Evans-Yamamoto , Dennis Bersenev , Sucheendra K. Palaniappan , Ayako Yachie-Kinoshita

Unified information extraction (UIE) aims to extract diverse structured information from unstructured text. While large language models (LLMs) have shown promise for UIE, they require significant computational resources and often struggle…

Computation and Language · Computer Science 2025-01-22 Xincheng Liao , Junwen Duan , Yixi Huang , Jianxin Wang

While large language models (LLMs) have been widely applied to code generation, they struggle with generating entire deep learning projects, which are characterized by complex structures, longer functions, and stronger reliance on domain…

Software Engineering · Computer Science 2025-04-22 Chen Xie , Mingsheng Jiao , Xiaodong Gu , Beijun Shen

Code synthesis, which requires a deep understanding of complex natural language problem descriptions, generation of code instructions for complex algorithms and data structures, and the successful execution of comprehensive unit tests,…

Computation and Language · Computer Science 2024-05-21 Md. Ashraful Islam , Mohammed Eunus Ali , Md Rizwan Parvez

Text is ubiquitous in our visual world, conveying crucial information, such as in documents, websites, and everyday photographs. In this work, we propose UReader, a first exploration of universal OCR-free visually-situated language…

Computer Vision and Pattern Recognition · Computer Science 2023-10-10 Jiabo Ye , Anwen Hu , Haiyang Xu , Qinghao Ye , Ming Yan , Guohai Xu , Chenliang Li , Junfeng Tian , Qi Qian , Ji Zhang , Qin Jin , Liang He , Xin Alex Lin , Fei Huang

Large Language Models (LLMs) have demonstrated remarkable capabilities in many real-world applications. Nonetheless, LLMs are often criticized for their tendency to produce hallucinations, wherein the models fabricate incorrect statements…

Computation and Language · Computer Science 2024-06-05 Qinggang Zhang , Junnan Dong , Hao Chen , Daochen Zha , Zailiang Yu , Xiao Huang

LLM-based universal information extraction (UIE) methods often rely on additional information beyond the original training data, which increases training complexity yet often yields limited gains. To address this, we propose ProUIE, a…

Computation and Language · Computer Science 2026-04-14 Wenda Liu , Zhigang Song , Shuai Nie , Guangyao Liu , Lisung Chen , Binyu Yang , Yaran Chen , Peng Zhou , Hongzhen Wang , Yuchen Liu , Wenyue Hu , Jiaming Xu , Runyu Shi , Ying Huang

The use of large language models (LLMs) in qualitative analysis offers enhanced efficiency but raises questions about their alignment with the contextual nature of research for design (RfD). This research examines the trustworthiness of…

Human-Computer Interaction · Computer Science 2025-04-24 Joel Oksanen , Andrés Lucero , Perttu Hämäläinen

Recently, leveraging large language models (LLMs) or multimodal large language models (MLLMs) for document understanding has been proven very promising. However, previous works that employ LLMs/MLLMs for document understanding have not…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Chuwei Luo , Yufan Shen , Zhaoqing Zhu , Qi Zheng , Zhi Yu , Cong Yao

Advances in natural language processing have resulted in large language models (LLMs) that are capable of generating understandable and sensible written text. Recent versions of these models, such as OpenAI Codex and GPT-3, can generate…

Software Engineering · Computer Science 2022-11-07 Stephen MacNeil , Andrew Tran , Arto Hellas , Joanne Kim , Sami Sarsa , Paul Denny , Seth Bernstein , Juho Leinonen

Large language models (LLMs) such as ChatGPT have shown remarkable capabilities in code generation. Despite significant achievements, they rely on enormous training data to acquire a broad spectrum of open-domain knowledge. Besides, their…

Software Engineering · Computer Science 2025-02-18 Xiaodong Gu , Meng Chen , Yalan Lin , Yuhan Hu , Hongyu Zhang , Chengcheng Wan , Zhao Wei , Yong Xu , Juhong Wang

There is a significant potential for coding skills to transition fully to natural language in the future. In this context, large language models (LLMs) have shown impressive natural language processing abilities to generate sophisticated…

Materials Science · Physics 2024-06-25 Prathamesh Satpute , Saurabh Tiwari , Maneet Gupta , Supriyo Ghosh

The recently released GPT-4 Code Interpreter has demonstrated remarkable proficiency in solving challenging math problems, primarily attributed to its ability to seamlessly reason with natural language, generate code, execute code, and…

Computation and Language · Computer Science 2023-10-06 Ke Wang , Houxing Ren , Aojun Zhou , Zimu Lu , Sichun Luo , Weikang Shi , Renrui Zhang , Linqi Song , Mingjie Zhan , Hongsheng Li

Large Language Models (LLMs) excel in natural language processing by encoding extensive human knowledge, but their utility relies on timely updates as knowledge evolves. Updating LLMs involves two key tasks simultaneously: unlearning to…

Computation and Language · Computer Science 2025-02-04 Binchi Zhang , Zhengzhang Chen , Zaiyi Zheng , Jundong Li , Haifeng Chen

Large Language Models (LLMs) specializing in code generation (which are also often referred to as code LLMs), e.g., StarCoder and Code Llama, play increasingly critical roles in various software development scenarios. It is also crucial for…

Large Language Models (LLMs) exhibit remarkable code generation capabilities but falter when adapting to frequent updates in external library APIs. This critical limitation, stemming from reliance on outdated API knowledge from their…

Computation and Language · Computer Science 2025-11-25 Haoze Wu , Yunzhi Yao , Wenhao Yu , Ningyu Zhang

Open Information Extraction (OIE) task aims at extracting structured facts from unstructured text, typically in the form of (subject, relation, object) triples. Despite the potential of large language models (LLMs) like ChatGPT as a general…

Computation and Language · Computer Science 2023-09-08 Chen Ling , Xujiang Zhao , Xuchao Zhang , Yanchi Liu , Wei Cheng , Haoyu Wang , Zhengzhang Chen , Takao Osaki , Katsushi Matsuda , Haifeng Chen , Liang Zhao

Instruction tuning has emerged as the key in aligning large language models (LLMs) with specific task instructions, thereby mitigating the discrepancy between the next-token prediction objective and users' actual goals. To reduce the labor…

Computation and Language · Computer Science 2024-04-10 Zifeng Wang , Chun-Liang Li , Vincent Perot , Long T. Le , Jin Miao , Zizhao Zhang , Chen-Yu Lee , Tomas Pfister

Large Language Models (LLMs) have transformed software development by enabling code generation, automated debugging, and complex reasoning. However, their continued advancement is constrained by the scarcity of high-quality, publicly…

Software Engineering · Computer Science 2025-08-11 Wasi Uddin Ahmad , Aleksander Ficek , Mehrzad Samadi , Jocelyn Huang , Vahid Noroozi , Somshubra Majumdar , Boris Ginsburg

Information extraction (IE) plays a crucial role in natural language processing (NLP) by converting unstructured text into structured knowledge. Deploying computationally intensive large language models (LLMs) on resource-constrained…

Computation and Language · Computer Science 2025-05-22 Zhihao Wen , Sheng Liang , Yaxiong Wu , Yongyue Zhang , Yong Liu
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