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We study the dynamics of an asymmetric simple exclusion process with open boundaries and local interactions using a pair approximation which generalizes the 2-node cluster mean field theory and the Markov chain approach to kinetics and…

Statistical Mechanics · Physics 2020-01-22 D. Botto , A. Pelizzola , M. Pretti

The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. However, even at thermal equilibrium, biological activity can…

Soft Condensed Matter · Physics 2014-02-19 Soya Shinkai , Yuichi Togashi

We discuss uniform infinite causal triangulations and equivalence to the size biased branching process measure - the critical Galton-Watson branching process distribution conditioned on non-extinction. Using known results from the theory of…

Mathematical Physics · Physics 2012-01-04 V. Sisko , A. Yambartsev , S. Zohren

We continue to develop a new approach to description of charge kinetics in disordered semiconductors. It is based on fractional diffusion equations. This article is devoted to transient processes in structures under dispersive transport…

Disordered Systems and Neural Networks · Physics 2013-10-02 Renat T. Sibatov , Vladimir V. Uchaikin

We develop a new fast-diffusion approximation for the kinetics of deposition of extended objects on a linear substrate, accompanied by diffusional relaxation. This new approximation plays the role of the mean-field theory for such processes…

Condensed Matter · Physics 2010-10-12 Vladimir Privman , Mustansir Barma

We present a new adaptive kernel density estimator based on linear diffusion processes. The proposed estimator builds on existing ideas for adaptive smoothing by incorporating information from a pilot density estimate. In addition, we…

Statistics Theory · Mathematics 2010-11-12 Z. I. Botev , J. F. Grotowski , D. P. Kroese

We study the universal dynamical relaxation behaviors of a quantum XY chain following a quench, paying special attention to the case that the prequenched Hamiltonian, or the postquenched Hamiltonian, or both of them are at critical points…

Statistical Mechanics · Physics 2023-08-02 Yin-Tao Zou , Chengxiang Ding

We revisit the applications of quasi-linear theory as a paradigmatic model for weak plasma turbulence and the associated bump-on-tail problem. The work, presented here, is built around the idea that large-amplitude or strongly shaped beams…

We solve two problems related to the fluctuations of time-integrated functionals of Markov diffusions, used in physics to model nonequilibrium systems. In the first we derive and illustrate the appropriate boundary conditions on the…

Statistical Mechanics · Physics 2023-02-01 Johan du Buisson

Diffusive transport in many complex systems features a crossover between anomalous diffusion at short times and normal diffusion at long times. This behavior can be mathematically modeled by cutting off (tempering) beyond a mesoscopic…

Statistical Mechanics · Physics 2021-10-15 Thomas Vojta , Zachary Miller , Samuel Halladay

The function of biomolecules such as proteins depends on their ability to interconvert between a wide range of structures or "conformations." Researchers have endeavored for decades to develop computational methods to predict the…

Biomolecules · Quantitative Biology 2026-02-05 Daniel D. Richman , Jessica Karaguesian , Carl-Mikael Suomivuori , Ron O. Dror

In this paper, we exploit the gradient flow structure of continuous-time formulations of Bayesian inference in terms of their numerical time-stepping. We focus on two particular examples, namely, the continuous-time ensemble Kalman-Bucy…

Numerical Analysis · Mathematics 2019-06-24 Sahani Pathiraja , Sebastian Reich

We show that particle transport in a uniform, quantum multi-baker map, is generically ballistic in the long time limit, for any fixed value of Planck's constant. However, for fixed times, the semi-classical limit leads to diffusion. Random…

Quantum Physics · Physics 2009-11-07 Daniel K. Wojcik , J. R. Dorfman

We investigate the dynamics under diabatic expansions/compressions of linear ion chains.Combining a dynamical normal-mode harmonic approximation with the invariant-based inverse-engineering technique, we design protocols that minimize the…

Quantum Physics · Physics 2016-08-03 M. Palmero , S. Martínez-Garaot , J. Alonso , J. P. Home , J. G. Muga

We give a probabilistic representation of a one-dimensional diffusion equation where the solution is discontinuous at $0$ with a jump proportional to its flux. This kind of interface condition is usually seen as a semi-permeable barrier.…

Probability · Mathematics 2016-06-28 Antoine Lejay

We study the diffusion of a Brownian particle quadratically coupled to a thermally fluctuating field. In the weak coupling limit, a path-integral formulation allows to compute the effective diffusion coefficient in the cases of an active…

Statistical Mechanics · Physics 2013-05-08 Vincent Démery

The Wright-Fisher process with selection is an important tool in population genetics theory. Traditional analysis of this process relies on the diffusion approximation. The diffusion approximation is usually studied in a partial…

Populations and Evolution · Quantitative Biology 2013-12-30 Joshua G. Schraiber

We study two constrained scalar models. While there seems to be equivalence when the partially integrated Feynman path integral is expanded graphically, the dynamical behaviour of the two models are different when quantization is done using…

High Energy Physics - Theory · Physics 2007-05-23 M. Hortacsu , K. Ulker

We numerically investigate the diffusive behavior of active Brownian particles in a two-dimensional confined channel filled with soft obstacles, whose softness is controlled by a parameter $K$. Here, active particles are subjected to…

Soft Condensed Matter · Physics 2024-10-22 Ankit Gupta , P. S. Burada

The mechanical properties within living cells play a critical role in the adaptive regulation of their biological functions upon environmental and internal stimuli. While these properties exhibit nonequilibrium dynamics due to the thermal…

Biological Physics · Physics 2024-08-14 Yuika Ueda , Shinji Deguchi