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In 1946, Erd\H{o}s posed the distinct distance problem, which seeks to find the minimum number of distinct distances between pairs of points selected from any configuration of $n$ points in the plane. The problem has since been explored…

We investigate quantum algorithms for classification, a fundamental problem in machine learning, with provable guarantees. Given $n$ $d$-dimensional data points, the state-of-the-art (and optimal) classical algorithm for training…

Quantum Physics · Physics 2019-05-28 Tongyang Li , Shouvanik Chakrabarti , Xiaodi Wu

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

Data Structures and Algorithms · Computer Science 2014-02-11 Gary Benson , Avivit Levy , Riva Shalom

Fractional superstrings are recently-proposed generalizations of the traditional superstrings and heterotic strings. They have critical spacetime dimensions which are less than ten, and in this paper we investigate model-building for the…

High Energy Physics - Theory · Physics 2009-10-22 Keith R. Dienes , S. -H. Henry Tye

Palindromes are strings that read the same forward and backward. Problems of computing palindromic structures in strings have been studied for many years with a motivation of their application to biology. The longest palindrome problem is…

Data Structures and Algorithms · Computer Science 2023-06-21 Kazuki Mitani , Takuya Mieno , Kazuhisa Seto , Takashi Horiyama

A longest repeat query on a string, motivated by its applications in many subfields including computational biology, asks for the longest repetitive substring(s) covering a particular string position (point query). In this paper, we extend…

Data Structures and Algorithms · Computer Science 2015-11-10 Bojian Xu

Fractional repetition (FR) codes is a family of codes for distributed storage systems (DSS) that allow uncoded exact repairs with minimum repair bandwidth. In this work, we consider a bound on the maximum amount of data that can be stored…

Information Theory · Computer Science 2015-01-22 Natalia Silberstein , Tuvi Etzion

In the past thirty years, numerous algorithms for building the suffix array of a string have been proposed. In 2021, the notion of suffix array was extended from strings to DFAs, and it was shown that the resulting data structure can be…

Data Structures and Algorithms · Computer Science 2023-10-10 Nicola Cotumaccio

Improved upper and lower bounds on the number of square-free ternary words are obtained. The upper bound is based on the enumeration of square-free ternary words up to length 110. The lower bound is derived by constructing generalised…

Combinatorics · Mathematics 2007-05-23 Uwe Grimm

We obtain new lower and upper bounds for the maximum multiplicity of some weighted and, respectively, non-weighted common geometric graphs drawn on n points in the plane in general position (with no three points collinear): perfect…

Discrete Mathematics · Computer Science 2011-09-27 Adrian Dumitrescu , André Schulz , Adam Sheffer , Csaba D. Tóth

Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…

Data Structures and Algorithms · Computer Science 2013-05-09 Emanuele Giaquinta , Szymon Grabowski

Planar point sets with many triple lines (which contain at least three distinct points of the set) have been studied for 180 years, started with Jackson and followed by Sylvester. Green and Tao has shown recently that the maximum possible…

Combinatorics · Mathematics 2013-02-26 György Elekes , Endre Szabó

This paper will analyze several quadratic-time solvable problems, and will classify them into two classes: problems that are solvable in truly subquadratic time (that is, in time $O(n^{2-\epsilon})$ for some $\epsilon>0$) and problems that…

Computational Complexity · Computer Science 2014-07-21 Michele Borassi , Pierluigi Crescenzi , Michel Habib

Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…

Data Structures and Algorithms · Computer Science 2025-09-22 Hamed Hasibi , Neerja Mhaskar , W. F. Smyth

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions needed to transform one string into the other. The textbook algorithm determines the edit distance of length-$n$ strings in $O(n^2)$ time,…

Data Structures and Algorithms · Computer Science 2025-02-04 Egor Gorbachev , Tomasz Kociumaka

Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…

Quantum Physics · Physics 2023-12-29 François Le Gall , Saeed Seddighin

We consider the problem of estimating the value of MAX-CUT in a graph in the streaming model of computation. At one extreme, there is a trivial $2$-approximation for this problem that uses only $O(\log n)$ space, namely, count the number of…

Data Structures and Algorithms · Computer Science 2018-11-28 Michael Kapralov , Dmitry Krachun

We revisit the so-called "Three Squares Lemma" by Crochemore and Rytter [Algorithmica 1995] and, using arguments based on Lyndon words, derive a more general variant which considers three overlapping squares which do not necessarily share a…

Discrete Mathematics · Computer Science 2020-07-23 Hideo Bannai , Takuya Mieno , Yuto Nakashima

The study of structural graph width parameters like tree-width, clique-width and rank-width has been ongoing during the last five decades, and their algorithmic use has also been increasing [Cygan et al., 2015]. New width parameters…

Data Structures and Algorithms · Computer Science 2025-01-23 Flavia Bonomo-Braberman , Eric Brandwein , Carolina Lucía González , Agustín Sansone

We say a string has a cadence if a certain character is repeated at regular intervals, possibly with intervening occurrences of that character. We call the cadence anchored if the first interval must be the same length as the others. We…

Data Structures and Algorithms · Computer Science 2016-10-12 Amihood Amir , Alberto Apostolico , Travis Gagie , Gad M. Landau