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Compressed indexing is a powerful technique that enables efficient querying over data stored in compressed form, significantly reducing memory usage and often accelerating computation. While extensive progress has been made for…

Data Structures and Algorithms · Computer Science 2025-10-23 Rajat De , Dominik Kempa

Fraenkel and Simpson showed that the number of distinct squares in a word of length n is bounded from above by 2n, since at most two distinct squares have their rightmost, or last, occurrence begin at each position. Improvements by Ilie to…

Formal Languages and Automata Theory · Computer Science 2017-08-23 F. Blanchet-Sadri , S. Osborne

Given a word $w$, what is the maximum possible number of appearances of $w$ reading contiguously along any of the directions in $\{-1, 0, 1\}^d \setminus \{\mathbf{0}\}$ in a large $d$-dimensional grid (as in a word search)? Patchell and…

Combinatorics · Mathematics 2025-12-01 Zachary Halberstam , Carl Schildkraut

Following (Kolpakov et al., 2013; Gawrychowski and Manea, 2015), we continue the study of {\em $\alpha$-gapped repeats} in strings, defined as factors $uvu$ with $|uv|\leq \alpha |u|$. Our main result is the $O(\alpha n)$ bound on the…

Formal Languages and Automata Theory · Computer Science 2015-10-05 Maxime Crochemore , Roman Kolpakov , Gregory Kucherov

We apply our recent Quantum Approximate Optimization Algorithm to the combinatorial problem of bounded occurrence Max E3LIN2. The input is a set of linear equations each of which contains exactly three boolean variables and each equation…

Quantum Physics · Physics 2015-06-26 Edward Farhi , Jeffrey Goldstone , Sam Gutmann

We revisit the problem of finding shortest unique substring (SUS) proposed recently by [6]. We propose an optimal $O(n)$ time and space algorithm that can find an SUS for every location of a string of size $n$. Our algorithm significantly…

Data Structures and Algorithms · Computer Science 2014-01-14 Atalay Mert İleri , M. Oğuzhan Külekci , Bojian Xu

A $k$-mismatch square is a string of the form $XY$ where $X$ and $Y$ are two equal-length strings that have at most $k$ mismatches. Kolpakov and Kucherov [Theor. Comput. Sci., 2003] defined two notions of $k$-mismatch repeats, called…

Data Structures and Algorithms · Computer Science 2025-09-03 Yuto Nakashima , Jakub Radoszewski , Tomasz Waleń

A basic problem for constant dimension codes is to determine the maximum possible size $A_q(n,d;k)$ of a set of $k$-dimensional subspaces in $\mathbb{F}_q^n$, called codewords, such that the subspace distance satisfies…

Information Theory · Computer Science 2022-12-22 Sascha Kurz

Repeat finding in strings has important applications in subfields such as computational biology. The challenge of finding the longest repeats covering particular string positions was recently proposed and solved by \.{I}leri et al., using a…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-01-28 Yun Tian , Bojian Xu

We construct a countable family of multi-dimensional continued fraction algorithms, built out of five specific multidimensional continued fractions, and find a wide class of cubic irrational real numbers a so that either (a, a^2) or (a,…

Given a dataset of $n$ user-contributed strings, each of length at most $\ell$, a key problem is how to identify all frequent substrings while preserving each user's privacy. Recent work by Bernardini et al. (PODS'25) introduced a…

Data Structures and Algorithms · Computer Science 2026-03-11 Peaker Guo , Rayne Holland , Hao Wu

We consider the problem of binary string reconstruction from the multiset of its substring compositions, i.e., referred to as the substring composition multiset, first introduced and studied by Acharya et al. We introduce a new algorithm…

Information Theory · Computer Science 2023-06-05 Utkarsh Gupta , Hessam Mahdavifar

We prove 3SUM-hardness (no strongly subquadratic-time algorithm, assuming the 3SUM conjecture) of several problems related to finding Abelian square and additive square factors in a string. In particular, we conclude conditional optimality…

Data Structures and Algorithms · Computer Science 2021-07-21 Jakub Radoszewski , Wojciech Rytter , Juliusz Straszyński , Tomasz Waleń , Wiktor Zuba

Classically, the edit distance of two length-$n$ strings can be computed in $O(n^2)$ time, whereas an $O(n^{2-\epsilon})$-time procedure would falsify the Orthogonal Vectors Hypothesis. If the edit distance does not exceed $k$, the running…

Data Structures and Algorithms · Computer Science 2023-11-06 Daniel Gibney , Ce Jin , Tomasz Kociumaka , Sharma V. Thankachan

A $\lambda$-cover of a string $S$ is a set of strings $\{C_i\}_1^\lambda$ such that every index in $S$ is contained in an occurrence of at least one string $C_i$. The existence of a $1$-cover defines a well-known class of quasi-periodic…

Data Structures and Algorithms · Computer Science 2024-05-21 Itai Boneh , Shay Golan , Arseny Shur

The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

Data Structures and Algorithms · Computer Science 2020-12-03 Bartłomiej Dudek , Paweł Gawrychowski

In this paper we develop combinatorial techniques for the case of string algebras with the aim to give a characterization of string complexes with infinite minimal projective resolution. These complexes will be called \textit{periodic…

Representation Theory · Mathematics 2020-06-26 Andrés Franco , Hernán Giraldo , Pedro Rizzo

The problem of identification of statistically significant patterns in a sequence of data has been applied to many domains such as intrusion detection systems, financial models, web-click records, automated monitoring systems, computational…

Databases · Computer Science 2012-07-03 Mayank Sachan , Arnab Bhattacharya

The effective string describing the large distance behaviour of the quark sources of gauge field theories in the confining phase in D=3 or D=4 space-time dimensions can be formulated, in the infrared limit, as a suitable 2D conformal field…

High Energy Physics - Lattice · Physics 2009-10-22 M. Caselle , F. Gliozzi , S. Vinti

Several string theories related to QCD in two dimensions are studied. For each of these theories the large $N$ free energy on a (target) sphere of area $A$ is calculated. By considering theories with different subsets of the geometrical…

High Energy Physics - Theory · Physics 2008-02-03 W. Taylor