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Persistent homology is a powerful mathematical tool that summarizes useful information about the shape of data allowing one to detect persistent topological features while one adjusts the resolution. However, the computation of such…

Quantum Physics · Physics 2022-03-01 Bernardo Ameneyro , Vasileios Maroulas , George Siopsis

Understanding the magnetic fields of the Sun is essential for unraveling the underlying mechanisms driving solar activity. Integrating topological data analysis techniques into these investigations can provide valuable insights into the…

Solar and Stellar Astrophysics · Physics 2024-01-31 Pablo Santamarina Guerrero , Yukio Katsukawa , Shin Toriumi , David Orozco Suárez

We investigate the similarities between adic finiteness and homological finiteness for chain complexes over a commutative noetherian ring. In particular, we extend the isomorphism properties of certain natural morphisms from homologically…

Commutative Algebra · Mathematics 2016-02-25 Sean Sather-Wagstaff , Richard Wicklein

Persistent homology, an algebraic method for discerning structure in abstract data, relies on the construction of a sequence of nested topological spaces known as a filtration. Two-parameter persistent homology allows the analysis of data…

Computational Geometry · Computer Science 2022-07-08 Anway De , Thong Vo , Matthew Wright

Symmetric homology is an analog of cyclic homology in which the cyclic groups are replaced by symmetric groups. The foundations for the theory of symmetric homology of algebras are developed in the context of crossed simplicial groups using…

Algebraic Topology · Mathematics 2008-07-29 Shaun Ault

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

The aim of this paper is to introduce and study a geometric spectral sequence in Khovanov homology. The construction was motivated by a similar spectral sequence from Khovanov homology to Heegaard Floer homology.

Geometric Topology · Mathematics 2017-05-17 Zoltan Szabo

Mapping between sequence and structure is currently an open problem in structural biology. Despite many experimental and computational efforts it is not clear yet how the structure is encoded in the sequence. Answering this question may…

Biomolecules · Quantitative Biology 2013-10-08 Iddo Friedberg

An Important tool in the field topological data analysis is known as persistent Homology (PH) which is used to encode abstract representation of the homology of data at different resolutions in the form of persistence diagram (PD). In this…

Image and Video Processing · Electrical Eng. & Systems 2022-07-13 Aras Asaad , Dashti Ali , Taban Majeed , Rasber Rashid

Persistent homology captures the evolution of topological features of a model as a parameter changes. The most commonly used summary statistics of persistent homology are the barcode and the persistence diagram. Another summary statistic,…

Methodology · Statistics 2016-04-01 Violeta Kovacev-Nikolic , Peter Bubenik , Dragan Nikolić , Giseon Heo

Inspired by Rumin's work on a subcomplex in sub-Riemannian manifolds which is cohomologically equivalent to the de Rham complex, we present a more general construction that produces subcomplexes from any filtered cochain complex of finite…

Differential Geometry · Mathematics 2025-10-13 Erlend Grong , Francesca Tripaldi

We introduce a formalism to produce several families of spectral sequences involving the derived functors of the limit and colimit functors over a finite partially ordered set. The first type of spectral sequences involves the left derived…

Commutative Algebra · Mathematics 2022-10-18 Josep Àlvarez Montaner , Alberto F. Boix , Santiago Zarzuela

We develop the notion of a "filtered cospan" as an algebraic object that stands in the same relation to interlevel persistence modules as filtered chain complexes stand with respect to sublevel persistence modules. This relation is…

Algebraic Topology · Mathematics 2026-01-01 Michael Usher

Multiparameter persistence is a natural extension of the well-known persistent homology, which has attracted a lot of interest. However, there are major theoretical obstacles preventing the full development of this promising theory. In this…

Algebraic Topology · Mathematics 2020-08-27 Jacek Brodzki , Matthew Burfitt , Mariam Pirashvili

Zigzag persistent homology is a powerful generalisation of persistent homology that allows one not only to compute persistence diagrams with less noise and using less memory, but also to use persistence in new fields of application.…

Computational Geometry · Computer Science 2016-08-23 Clément Maria , Steve Oudot

Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field.…

Statistics Theory · Mathematics 2013-05-28 Frédéric Chazal , Marc Glisse , Catherine Labruère , Bertrand Michel

A suitable feature representation that can both preserve the data intrinsic information and reduce data complexity and dimensionality is key to the performance of machine learning models. Deeply rooted in algebraic topology, persistent…

Algebraic Topology · Mathematics 2018-11-02 Chi Seng Pun , Kelin Xia , Si Xian Lee

We use topological data analysis to study "functional networks" that we construct from time-series data from both experimental and synthetic sources. We use persistent homology with a weight rank clique filtration to gain insights into…

Quantitative Methods · Quantitative Biology 2017-05-24 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

We study a variation of Carlsson and Zomorodian's persistent homology. As an application, we analyze the persistent cellular sheaf cohomology of network coding sheaves on deteriorating networks.

Algebraic Topology · Mathematics 2017-11-07 Karthik Yegnesh