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Graphics processing units (GPU) had evolved from a specialized hardware capable to render high quality graphics in games to a commodity hardware for effective processing blocks of data in a parallel schema. This evolution is particularly…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-26 Luis Cabellos

Large-scale parallel numerical simulations are essential for a wide range of engineering problems that involve complex, coupled physical processes interacting across a broad range of spatial and temporal scales. The data structures involved…

Mathematical Software · Computer Science 2018-10-11 Fande Kong , Roy H. Stogner , Derek R. Gaston , John W. Peterson , Cody J. Permann , Andrew E. Slaughter , Richard C. Martineau

Peripheral Component Interconnect Express (PCIe) is the de facto interconnect standard for high-speed peripherals and CPUs. The development of PCIe devices for emerging applications requires realistic Transaction Layer Packet (TLP) traces…

Translating programs between various parallel programming languages is an important problem in the high-performance computing (HPC) community. Existing tools for this problem are either too narrow in scope and/or outdated. Recent explosive…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-16 Tomer Bitan , Tal Kadosh , Erel Kaplan , Shira Meiri , Le Chen , Peter Morales , Niranjan Hasabnis , Gal Oren

Stochastic, spatial reaction-diffusion simulations have been widely used in systems biology and computational neuroscience. However, the increasing scale and complexity of simulated models and morphologies have exceeded the capacity of any…

Quantitative Methods · Quantitative Biology 2016-10-10 Weiliang Chen , Erik De Schutter

We introduce the Romu family of pseudo-random number generators (PRNGs) which combines the nonlinear operation of rotation with the linear operations of multiplication and (optionally) addition. Compared to conventional linear-only PRNGs,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-27 Mark A. Overton

The rapidly growing number of large network analysis problems has led to the emergence of many parallel and distributed graph processing systems---one survey in 2014 identified over 80. Since then, the landscape has evolved; some packages…

Performance · Computer Science 2017-05-18 Samuel Pollard , Boyana Norris

With the advent of hundreds of cores on a chip to accelerate applications, the operating system (OS) needs to exploit the existing parallelism provided by the underlying hardware resources to determine the right amount of processes to be…

Operating Systems · Computer Science 2025-01-07 Yao Xiao , Nikos Kanakaris , Anzhe Cheng , Chenzhong Yin , Nesreen K. Ahmed , Shahin Nazarian , Andrei Irimia , Paul Bogdan

Large-scale distributed graph-parallel computing is challenging. On one hand, due to the irregular computation pattern and lack of locality, it is hard to express parallelism efficiently. On the other hand, due to the scale-free nature,…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-22 Jie Yan , Guangming Tan , Ninghui Sun

Transformer achieves promising results on various tasks. However, self-attention suffers from quadratic memory requirements with respect to the sequence length. Existing work focuses on reducing time and space complexity from an algorithm…

Machine Learning · Computer Science 2022-05-24 Shenggui Li , Fuzhao Xue , Chaitanya Baranwal , Yongbin Li , Yang You

As processors increase in complexity, costs grow even more rapidly, both for functional verification and performance validation. Most often, silicon characterizations comprise simple performance counters, which are aggregated and separated…

Hardware Architecture · Computer Science 2025-09-26 Daniel Ruelas-Petrisko , Farzam Gilani , Anoop Mysore Nataraja , Zoe Taylor , Michael Taylor

Discovering causal relationships from observational data is a crucial problem and it has applications in many research areas. The PC algorithm is the state-of-the-art constraint based method for causal discovery. However, runtime of the PC…

Artificial Intelligence · Computer Science 2016-11-11 Thuc Duy Le , Tao Hoang , Jiuyong Li , Lin Liu , Huawen Liu

Processing very large graphs like social networks, biological and chemical compounds is a challenging task. Distributed graph processing systems process the billion-scale graphs efficiently but incur overheads of efficient partitioning and…

Data Structures and Algorithms · Computer Science 2014-01-13 Kamran Najeebullah , Kifayat Ullah Khan , Waqas Nawaz , Young-Koo Lee

Intel Xeon Phi is a recently released high-performance coprocessor which features 61 cores each supporting 4 hardware threads with 512-bit wide SIMD registers achieving a peak theoretical performance of 1Tflop/s in double precision. Many…

Performance · Computer Science 2013-02-06 Erik Saule , Kamer Kaya , Umit V. Catalyurek

Brain simulation, as one of the latest advances in artificial intelligence, facilitates better understanding about how information is represented and processed in the brain. The extreme complexity of human brain makes brain simulations only…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-17 Xin Du

Message Passing Interface (MPI) is widely used to implement parallel programs. Although Windowsbased architectures provide the facilities of parallel execution and multi-threading, little attention has been focused on using MPI on these…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-05-31 Alaa Ismail Elnashar

In 2013 Intel introduced the Xeon Phi, a new parallel co-processor board. The Xeon Phi is a cache-coherent many-core shared memory architecture claiming CPU-like versatility, programmability, high performance, and power efficiency. The…

Performance · Computer Science 2014-11-10 S. Ali Mirsoleimani , Aske Plaat , Jos Vermaseren , Jaap van den Herik

The parallel simulation of Spiking Neural P systems is mainly based on a matrix representation, where the graph inherent to the neural model is encoded in an adjacency matrix. The simulation algorithm is based on a matrix-vector…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-09 Javier Hernández-Tello , Miguel Ángel Martínez-del-Amor , David Orellana-Martín , Francis George C. Cabarle

We propose a simulation-based approach for performance modeling of parallel applications on high-performance computing platforms. Our approach enables full-system performance modeling: (1) the hardware platform is represented by an abstract…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-06 Gen Xu , Huda Ibeid , Xin Jiang , Vjekoslav Svilan , Zhaojuan Bian

The rapid scaling of Large Language Models (LLMs) has pushed training workloads far beyond the limits of single-node analysis, demanding a deeper understanding of how these models behave across large-scale, multi-GPU systems. In this paper,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-22 Seokjin Go , Joongun Park , Spandan More , Hanjiang Wu , Irene Wang , Aaron Jezghani , Tushar Krishna , Divya Mahajan