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This paper proposes a novel online evaluation protocol for Test Time Adaptation (TTA) methods, which penalizes slower methods by providing them with fewer samples for adaptation. TTA methods leverage unlabeled data at test time to adapt to…

Inferring the parameters of models describing biological systems is an important problem in the reverse engineering of the mechanisms underlying these systems. Much work has focused on parameter inference of stochastic and ordinary…

Quantitative Methods · Quantitative Biology 2021-11-09 Thomas Thorne , Paul D. W. Kirk , Heather A. Harrington

While the strength of Topological Data Analysis has been explored in many studies on high dimensional numeric data, it is still a challenging task to apply it to text. As the primary goal in topological data analysis is to define and…

Machine Learning · Computer Science 2020-03-31 Shafie Gholizadeh , Ketki Savle , Armin Seyeditabari , Wlodek Zadrozny

Symbolic data analysis (SDA) aggregates large individual-level datasets into a small number of distributional summaries, such as random rectangles or random histograms. The inference is carried out using these summaries in place of the…

Methodology · Statistics 2026-04-02 Yu Yang , Matias Quiroz , Boris Beranger , Robert Kohn , Scott A. Sisson

This survey provides a comprehensive exploration of applications of Topological Data Analysis (TDA) within neural network analysis. Using TDA tools such as persistent homology and Mapper, we delve into the intricate structures and behaviors…

Machine Learning · Computer Science 2024-01-04 Rubén Ballester , Carles Casacuberta , Sergio Escalera

Topological Data Analysis (TDA) has recently gained significant attention in the field of financial prediction. However, the choice of point cloud construction methods, topological feature representations, and classification models has a…

Machine Learning · Computer Science 2024-11-22 Dazhi Huang , Pengcheng Xu , Xiaocheng Huang , Jiayi Chen

Topological data analysis can extract effective information from higher-dimensional data. Its mathematical basis is persistent homology. The persistent homology can calculate topological features at different spatiotemporal scales of the…

Algebraic Topology · Mathematics 2023-09-29 Dinghua Shi , Zhifeng Chen , Chuang Ma , Guanrong Chen

Topological Data Analysis (TDA) is an approach to handle with big data by studying its shape. A main tool of TDA is the persistence diagram, and one can use it to compare data sets. One approach to learn on the similarity between two…

Applications · Statistics 2020-03-04 Sarit Agami

Let $\R$ be a real closed field, $ {\mathcal Q} \subset \R[Y_1,...,Y_\ell,X_1,...,X_k], $ with $ \deg_{Y}(Q) \leq 2, \deg_{X}(Q) \leq d, Q \in {\mathcal Q}, #({\mathcal Q})=m$, and $ {\mathcal P} \subset \R[X_1,...,X_k] $ with $\deg_{X}(P)…

Geometric Topology · Mathematics 2010-10-21 Saugata Basu , Dmitrii V. Pasechnik , Marie-Françoise Roy

In this work we evaluate the performance of three classes of methods for detecting financial anomalies: topological data analysis (TDA), principal component analyis (PCA), and Neural Network-based approaches. We apply these methods to the…

Statistical Finance · Quantitative Finance 2026-04-06 Luigi Caputi , Nicholas Meadows

Topological Data Analysis (TDA) is a recent and growing branch of statistics devoted to the study of the shape of the data. In this work we investigate the predictive power of TDA in the context of supervised learning. Since topological…

Machine Learning · Statistics 2017-09-22 Tullia Padellini , Pierpaolo Brutti

We introduce an innovative, data-driven topological data analysis (TDA) technique for estimating the state spaces of dynamically changing functional human brain networks at rest. Our method utilizes the Wasserstein distance to measure…

Algebraic Topology · Mathematics 2024-04-18 Moo K. Chung , Shih-Gu Huang , Ian C. Carroll , Vince D. Calhoun , H. Hill Goldsmith

We represent excursion sets of smooth random fields as unions of a topological basis consisting of a sequence of simply and multiply connected compact subsets of the underlying manifold. The associated coefficients, which are non-negative…

Statistics Theory · Mathematics 2025-07-11 Pravabati Chingangbam

Topological Data Analysis (TDA) has emerged as a powerful framework for extracting robust, multiscale, and interpretable features from complex molecular data for artificial intelligence (AI) modeling and topological deep learning (TDL).…

Biomolecules · Quantitative Biology 2025-09-23 JunJie Wee , Jian Jiang

Anomaly detection in multivariate signals is a task of paramount importance in many disciplines (epidemiology, finance, cognitive sciences and neurosciences, oncology, etc.). In this perspective, Topological Data Analysis (TDA) offers a…

Signal Processing · Electrical Eng. & Systems 2024-04-25 Stéphane Chrétien , Ben Gao , Astrid Thebault-Guiochon , Rémi Vaucher

Topological data analysis (TDA) is a tool from data science and mathematics that is beginning to make waves in environmental science. In this work, we seek to provide an intuitive and understandable introduction to a tool from TDA that is…

Machine Learning · Computer Science 2025-07-15 Lander Ver Hoef , Henry Adams , Emily J. King , Imme Ebert-Uphoff

Training Data Attribution (TDA) seeks to trace model predictions back to influential training examples, enhancing interpretability and safety. We formulate TDA as a Bayesian information-theoretic problem: subsets are scored by the…

Machine Learning · Computer Science 2026-04-10 Dharmesh Tailor , Nicolò Felicioni , Kamil Ciosek

In this paper the analysis of the result of numerical simulations of pasta phases using algebraic topology methods is presented. These considerations suggest that some phases can be further split into (sub)phases and therefore should be…

High Energy Astrophysical Phenomena · Physics 2017-09-25 Radosław A. Kycia , Sebastian Kubis , Włodzimierz Wójcik

We specialize techniques from topological data analysis to the problem of characterizing the topological complexity (as defined in the body of the paper) of a multi-class data set. As a by-product, a topological classifier is defined that…

Machine Learning · Computer Science 2024-06-10 Christopher Griffin , Trevor Karn , Benjamin Apple

We introduce a novel approach named the {\it induced-subgraph approach} for investigating the Betti numbers of normal edge rings. Utilizing this approach, we compute all the multi-graded Betti numbers of the edge rings associated with…

Commutative Algebra · Mathematics 2025-05-02 Zexin Wang , Dancheng Lu