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Persistent homology is a popular tool in Topological Data Analysis. It provides numerical characteristics of data sets which reflect global geometric properties. In order to be useful in practice, for example for feature generation in…

Computational Geometry · Computer Science 2020-02-17 Boris Goldfarb

In this paper, three Computational Topology methods (namely effective homology, persistent homology and discrete vector fields) are mixed together to produce algorithms for homological digital image processing. The algorithms have been…

Computer Vision and Pattern Recognition · Computer Science 2014-12-22 Ana Romero , Julio Rubio , Francis Sergeraert

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei

We prove a general representation stability result for polynomial coefficient systems which lets us prove representation stability and secondary homological stability for many families of groups with polynomial coefficients. This gives two…

Algebraic Topology · Mathematics 2021-06-22 Jeremy Miller , Peter Patzt , Dan Petersen

Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field.…

Statistics Theory · Mathematics 2013-05-28 Frédéric Chazal , Marc Glisse , Catherine Labruère , Bertrand Michel

A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via persistent homology, which encodes features of interest as…

Algebraic Topology · Mathematics 2026-02-04 Christian Lentz , Gregory Henselman-Petrusek , Lori Ziegelmeier

We propose a general technique for extracting a larger set of stable information from persistent homology computations than is currently done. The persistent homology algorithm is usually viewed as a procedure which starts with a filtered…

Computational Geometry · Computer Science 2021-01-29 Paul Bendich , Peter Bubenik , Alexander Wagner

Persistent homology is a leading tool in topological data analysis (TDA). Many problems in TDA can be solved via homological -- and indeed, linear -- algebra. However, matrices in this domain are typically large, with rows and columns…

Algebraic Topology · Mathematics 2021-08-23 Haibin Hang , Chad Giusti , Lori Ziegelmeier , Gregory Henselman-Petrusek

Tensor train (TT) decomposition is a powerful representation for high-order tensors, which has been successfully applied to various machine learning tasks in recent years. However, since the tensor product is not commutative, permutation of…

Numerical Analysis · Computer Science 2017-05-31 Qibin Zhao , Masashi Sugiyama , Andrzej Cichocki

Persistent homology is a widely used tool in Topological Data Analysis that encodes multiscale topological information as a multi-set of points in the plane called a persistence diagram. It is difficult to apply statistical theory directly…

Statistics Theory · Mathematics 2013-12-03 Frédéric Chazal , Brittany Terese Fasy , Fabrizio Lecci , Alessandro Rinaldo , Larry Wasserman

Probabilistic models learned as density estimators can be exploited in representation learning beside being toolboxes used to answer inference queries only. However, how to extract useful representations highly depends on the particular…

Machine Learning · Computer Science 2016-08-12 Antonio Vergari , Nicola Di Mauro , Floriana Esposito

The representer theorem is a cornerstone of kernel methods, which aim to estimate latent functions in reproducing kernel Hilbert spaces (RKHSs) in a nonparametric manner. Its significance lies in converting inherently infinite-dimensional…

Machine Learning · Statistics 2026-02-06 Hideaki Kim , Tomoharu Iwata

As graph-structured data grow increasingly large, evaluating their robustness under adversarial attacks becomes computationally expensive and difficult to scale. To address this challenge, we propose to compress graphs into compact…

Machine Learning · Computer Science 2025-11-26 Qisen Chai , Yansong Wang , Junjie Huang , Tao Jia

The persistent homology with coefficients in a field F coincides with the same for cohomology because of duality. We propose an implementation of a recently introduced algorithm for persistent cohomology that attaches annotation vectors…

Computational Geometry · Computer Science 2020-01-09 Jean-Daniel Boissonnat , Tamal K. Dey , Clément Maria

A central challenge in topological data analysis is the interpretation of barcodes. The classical algebraic-topological approach to interpreting homology classes is to build maps to spaces whose homology carries semantics we understand and…

Algebraic Topology · Mathematics 2023-08-11 Iris H. R. Yoon , Robert Ghrist , Chad Giusti

We present two continuous symmetry reduction methods for reducing high-dimensional dissipative flows to local return maps. In the Hilbert polynomial basis approach, the equivariant dynamics is rewritten in terms of invariant coordinates. In…

Chaotic Dynamics · Physics 2011-01-10 Evangelos Siminos , Predrag Cvitanović

We extend the persistence algorithm, viewed as an algorithm computing the homology of a complex of free persistence or graded modules, to complexes of modules that are not free. We replace persistence modules by their presentations and…

Algebraic Topology · Mathematics 2024-03-19 Tamal K. Dey , Florian Russold , Shreyas N. Samaga

We set up the theory for a distributed algorithm for computing persistent homology. For this purpose we develop linear algebra of persistence modules. We present bases of persistence modules, and give motivation as for the advantages of…

Algebraic Topology · Mathematics 2023-10-24 Álvaro Torras Casas

Persistent homology (PH) is one of the main methods used in Topological Data Analysis. An active area of research in the field is the study of appropriate notions of PH representatives, which allow to interpret the meaning of the…

Algebraic Topology · Mathematics 2024-12-12 Antonio Leitao , Nina Otter

Dynamic quantum simulation is a leading application for achieving quantum advantage. However, high circuit depths remain a limiting factor on near-term quantum hardware. We present a compilation algorithm based on Matrix Product Operators…

Quantum Physics · Physics 2025-07-16 Joe Gibbs , Lukasz Cincio