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In many cellular signaling pathways, key components form clusters at the cell membrane. Although much work has focused on the mechanisms behind such cluster formation, the implications for downstream signaling remain poorly understood.…

Molecular Networks · Quantitative Biology 2012-03-14 Andrew Mugler , Aimee Gotway Bailey , Koichi Takahashi , Pieter Rein ten Wolde

In swarms of flying insects, the motions of individuals are largely uncoordinated with those of their neighbors, unlike the highly ordered motion of bird flocks. However, it has been observed that insects may transiently form pairs with…

Mixtures of active and passive particles are predicted to exhibit a variety of nonequilibrium phases. Here we report a dynamic clustering phase in mixtures of colloids and motile bacteria. We show that colloidal clustering results from a…

Soft Condensed Matter · Physics 2022-05-25 Shreyas Gokhale , Junang Li , Alexandre Solon , Jeff Gore , Nikta Fakhri

We study the spatial distribution of gyrotactic microorganisms transported by a three-dimensional turbulent flow generated by direct numerical simulations. We find that gyrotaxis combines with turbulent fluctuations to produce small scales…

Chaotic Dynamics · Physics 2012-06-13 Filippo De Lillo , Guido Boffetta , Massimo Cencini

Swarms of large numbers of agents appear in many biological and engineering fields. Dynamic bi-stability of co-existing spatio-temporal patterns has been observed in many models of large population swarms. However, many reduced models for…

Pattern Formation and Solitons · Physics 2015-06-17 Luis Mier-y-Teran-Romero , Ira B. Schwartz

Based on Brownian Dynamics (BD) simulations, we study the dynamical self-assembly of active Brownian particles with dipole-dipole interactions, stemming from a permanent point dipole at the particle center. The propulsion direction of each…

Soft Condensed Matter · Physics 2021-06-09 Guo-Jun Liao , Carol K. Hall , Sabine H. L. Klapp

Self-organization of heterogeneous particle swarms is rich in its dynamics but hard to design in a traditional top-down manner, especially when many types of kinetically distinct particles are involved. In this chapter, we discuss how we…

Neural and Evolutionary Computing · Computer Science 2017-05-29 Hiroki Sayama

We develop the hydrodynamic theory of dry, polar ordered, active matter (``flocking") with autochemotaxis; i.e., self-propelled entities moving in the same direction, each emitting a substance which attracts the others (e.g., ants). We find…

Soft Condensed Matter · Physics 2024-01-22 Maxx Miller , John Toner

The ball lightning phenomenon is explained in the frame of a self-organization scenario suggested by experiments performed on the spontaneously generated complex spherical space charge configuration in plasma. Originated in a hot plasma,…

Pattern Formation and Solitons · Physics 2007-08-31 Erzilia Lozneanu , Sebastian Popescu , Mircea Sanduloviciu

It is well known that bees cluster together in cold weather, in the process of swarming (when the ``old'' queen leaves with part of the colony) or absconding (when the queen leaves with all the colony) and in defense against intruders such…

Biological Physics · Physics 2011-12-26 Zhengwei Wang , Lei Wang , Ken Tan , Zengru Di , Bertrand M. Roehner

Self-propelled particles can spontaneously form dense phases from a dilute suspension in a process referred to as motility-induced phase separation. The properties of the out-of-equilibrium structures that are formed are governed by the…

Soft Condensed Matter · Physics 2016-09-08 Sven Erik Ilse , Christian Holm , Joost de Graaf

Blue stragglers are thought to be formed from the merger or coalescence of two stars, but the details of their formation in clusters has been difficult to disentangle. We discuss the two main formation mechanisms for blue stragglers…

Solar and Stellar Astrophysics · Physics 2015-05-19 Alison Sills

In this paper, we investigate the complex dynamics of a spatial plankton-fish system with Holling type III functional responses. We have carried out the analytical study for both one and two dimensional system in details and found out a…

Pattern Formation and Solitons · Physics 2011-03-18 Ranjit Kumar Upadhyay , Weiming Wang , N. K. Thakur

Using N-body simulations, we have modeled the production and evolution of substructures in the intracluster light (ICL) of a simulated galaxy cluster. We use a density-based definition of ICL, where ICL consists of luminous particles which…

Astrophysics of Galaxies · Physics 2011-02-11 Craig S. Rudick , J. Christopher Mihos , Lucille H. Frey , Cameron K. McBride

Meso-scale turbulence was originally observed experimentally in various suspensions of swimming bacteria, as well as in the collective motion of active colloids. The corresponding large-scale dynamical patterns were reproduced in a simple…

Soft Condensed Matter · Physics 2021-03-30 Vasco M. Worlitzer , Gil Ariel , Avraham Be'er , Holger Stark , Markus Bär , Sebastian Heidenreich

Minimal models of active Brownian colloids consisting of self-propelled spherical particles with purely repulsive interactions have recently been identified as excellent quantitative testing grounds for theories of active matter and have…

Soft Condensed Matter · Physics 2016-04-12 M. Cristina Marchetti , Yaouen Fily , Silke Henkes , Adam Patch , David Yllanes

We consider the extension of the `Moran effect', where correlated noise generates synchrony between isolated single species populations, to the study of synchrony between populations embedded in multi-species communities. In laboratory…

Populations and Evolution · Quantitative Biology 2016-01-18 Emma J. Bowen , Todd L. Parsons , Thomas P. Curtis , Joshua B. Plotkin , Christopher Quince

We study the swarming behavior of hydrodynamic alignment. Alignment reflects steering towards a weighted average heading. We consider the class of so-called $p$-alignment hydrodynamics, based on $2p$-Laplacians, and weighted by a general…

Analysis of PDEs · Mathematics 2022-09-07 Eitan Tadmor

We present the hydrodynamic theory of coherent collective motion ("flocking") at a solid-liquid interface, and many of its predictions for experiment. We find that such systems are stable, and have long-range orientational order, over a…

Soft Condensed Matter · Physics 2022-01-05 Niladri Sarkar , Abhik Basu , John Toner

We explore the crystallization in a colloidal monolayer on a structured template starting from a few-particle nucleus. The competition between the substrate structure and that of the growing crystal induces a new crystal growth scenario.…

Soft Condensed Matter · Physics 2013-07-09 Tim Neuhaus , Michael Schmiedeberg , Hartmut Löwen
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