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The spread of infectious disease in a human community or the proliferation of fake news on social media can be modeled as a randomly growing tree-shaped graph. The history of the random growth process is often unobserved but contains…

Probability · Mathematics 2021-01-15 Harry Crane , Min Xu

We study the spread of susceptible-infected-recovered (SIR) infectious diseases where an individual's infectiousness and probability of recovery depend on his/her "age" of infection. We focus first on early outbreak stages when stochastic…

Populations and Evolution · Quantitative Biology 2009-05-14 Joel Miller , Bahman Davoudi , Rafael Meza , Anja Slim , Babak Pourbohloul

The spread of an infectious disease depends on intrinsic properties of the disease as well as the connectivity and actions of the population. This study investigates the dynamics of an SIR type model which accounts for human tendency to…

Dynamical Systems · Mathematics 2021-07-26 Hannah Scanlon , John Gemmer

With the covid-19 pandemic still ongoing and an enormous amount of test data available, the lessons learned over the last two years need to be developed to a point where they can provide understanding for tackling new variants and future…

Populations and Evolution · Quantitative Biology 2022-06-09 Adam Mielke

We model the spreading of a crisis by constructing a global economic network and applying the Susceptible-Infected-Recovered (SIR) epidemic model with a variable probability of infection. The probability of infection depends on the strength…

Physics and Society · Physics 2010-11-29 Antonios Garas , Panos Argyrakis , Celine Rozenblat , Marco Tomassini , Shlomo Havlin

We study the statistical properties of the SIR epidemics in heterogeneous networks, when an epidemic is defined as only those SIR propagations that reach or exceed a minimum size s_c. Using percolation theory to calculate the average…

Populations and Evolution · Quantitative Biology 2009-11-13 C. Lagorio , M. V. Migueles , L. A. Braunstein , E. López , P. A. Macri

This study focuses on investigating the manner in which a prompt quarantine measure suppresses epidemics in networks. A simple and ideal quarantine measure is considered in which an individual is detected with a probability immediately…

Physics and Society · Physics 2017-08-16 Takehisa Hasegawa , Koji Nemoto

When an infectious disease outbreak is of a relatively small size, describing the ancestry of a sample of infected individuals is difficult because most ancestral models assume large population sizes. Given a set of infected individuals, we…

Populations and Evolution · Quantitative Biology 2025-01-31 Xavier Didelot , David Helekal , Ian Roberts

Towards the end of an infectious disease outbreak, when a period has elapsed without new case notifications, a key question for public health policy makers is whether the outbreak can be declared over. This requires the benefits of a…

Populations and Evolution · Quantitative Biology 2025-08-22 M. J. Plank , W. S. Hart , J. Polonsky , M. Keita , S. Ahuka-Mundeke , R. N. Thompson

Susceptible-Invective-Recovered (SIR) mathematical models are in high demand due to the COVID-19 pandemic. They are used in their standard formulation, or through the many variants, trying to fit and hopefully predict the number of new…

Populations and Evolution · Quantitative Biology 2020-05-19 Ben-Hur Francisco Cardoso , Sebastián Gonçalves

This work examines the discrete-time networked SIR (susceptible-infected-recovered) epidemic model, where the infection and recovery parameters may be time-varying. We provide a sufficient condition for the SIR model to converge to the set…

Systems and Control · Electrical Eng. & Systems 2021-03-01 Ciyuan Zhang , Humphrey Leung , Brooks Butler , Philip. E. Paré

Analytical expressions for the basic reproduction number, R0, have been obtained in the past for a wide variety of mathematical models for infectious disease spread, along with expressions for the expected final size of an outbreak.…

Populations and Evolution · Quantitative Biology 2018-12-18 Sherry Towers , Linda J. S. Allen , Fred Brauer , Baltazar Espinoza

We use the susceptible-infected-recovered (SIR) model for disease spread over a network, and empirically study how well various centrality measures perform at identifying which nodes in a network will be the best spreaders of disease on 10…

Social and Information Networks · Computer Science 2012-08-23 Brian Macdonald , Paulo Shakarian , Nicholas Howard , Geoffrey Moores

Epidemiological models describe the spread of an infectious disease within a population. They capture microscopic details on how the disease is passed on among individuals in various different ways, while making predictions about the state…

Populations and Evolution · Quantitative Biology 2024-02-27 Stefan Hohenegger , Francesco Sannino

In epidemiology, an epidemic is defined as the spread of an infectious disease to a large number of people in a given population within a short period of time. In the marketing context, a message is viral when it is broadly sent and…

Physics and Society · Physics 2015-07-28 Helena Sofia Rodrigues , Manuel José Fonseca

The transmission dynamics of an epidemic are rarely homogeneous. Super-spreading events and super-spreading individuals are two types of heterogeneous transmissibility. Inference of super-spreading is commonly carried out on secondary case…

Quantitative Methods · Quantitative Biology 2025-01-23 Hannah Craddock , Simon EF Spencer , Xavier Didelot

Contact patterns in populations fundamentally influence the spread of infectious diseases. Current mathematical methods for epidemiological forecasting on networks largely assume that contacts between individuals are fixed, at least for the…

Populations and Evolution · Quantitative Biology 2007-05-23 Erik Volz , Lauren Ancel Meyers

During an infectious disease outbreak, biases in the data and complexities of the underlying dynamics pose significant challenges in mathematically modelling the outbreak and designing policy. Motivated by the ongoing response to COVID-19,…

The expected number of secondary infections arising from each index case, referred to as the reproduction or $R$ number, is a vital summary statistic for understanding and managing epidemic diseases. There are many methods for estimating…

Applications · Statistics 2022-02-22 Joe Meagher , Nial Friel

The SIR model is a classical model characterizing the spreading of infectious diseases. This model describes the time-dependent quantity changes among Susceptible, Infectious, and Recovered groups. By introducing space-depend effects such…

Quantitative Methods · Quantitative Biology 2024-09-18 Md Abu Talha , Yongjia Xu , Shan Zhao , Weihua Geng