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Efficient text indexing data structures have enabled large-scale genomic sequence analysis and are used to help solve problems ranging from assembly to read mapping. However, these data structures typically assume that the underlying…

Genomics · Quantitative Biology 2016-04-13 Nitish Gupta , Komal Sanjeev , Tim Wall , Carl Kingsford , Rob Patro

We propose a new linear-size data structure which provides a fast access to all palindromic substrings of a string or a set of strings. This structure inherits some ideas from the construction of both the suffix trie and suffix tree. Using…

Data Structures and Algorithms · Computer Science 2015-08-18 Mikhail Rubinchik , Arseny M. Shur

Existing path lookup routines in file systems need to construct an auxiliary index in memory or traverse the dentries of the directory file sequentially, which brings either heavy writes or large timing cost. This paper designs a novel path…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-07 Runyu Zhang , Chaoshu Yang

String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…

Data Structures and Algorithms · Computer Science 2023-03-13 Thierry Lecroq

We consider strategies to organize easily updatable associative arrays in external memory. These arrays are used for full-text search. We study indexes with different keys: single word form, two word forms, and sequences of word forms. The…

Information Retrieval · Computer Science 2020-07-21 Alexander B. Veretennikov

Recent years have seen growing interest in the retrofitting of type systems onto dynamically-typed programming languages, in order to improve type safety, programmer productivity, or performance. In such cases, type system developers must…

Programming Languages · Computer Science 2016-05-05 Esben Andreasen , Colin S. Gordon , Satish Chandra , Manu Sridharan , Frank Tip , Koushik Sen

During maintenance, software developers deal with numerous change requests that are written in an unstructured fashion using natural language. Such natural language texts illustrate the change requirement involving various domain related…

Software Engineering · Computer Science 2018-07-13 Mohammad Masudur Rahman , Chanchal K. Roy

The text retrieval is the task of retrieving similar documents to a search query, and it is important to improve retrieval accuracy while maintaining a certain level of retrieval speed. Existing studies have reported accuracy improvements…

Information Retrieval · Computer Science 2023-11-15 Yuichi Sasazawa , Kenichi Yokote , Osamu Imaichi , Yasuhiro Sogawa

We present a novel compressed dynamic self-index for highly repetitive text collections. Signature encoding is a compressed dynamic self-index for highly repetitive texts and has a large disadvantage that the pattern search for short…

Data Structures and Algorithms · Computer Science 2018-04-25 Takaaki Nishimoto , Yoshimasa Takabatake , Yasuo Tabei

We present the Cuckoo Trie, a fast, memory-efficient ordered index structure. The Cuckoo Trie is designed to have memory-level parallelism -- which a modern out-of-order processor can exploit to execute DRAM accesses in parallel -- without…

Data Structures and Algorithms · Computer Science 2022-01-25 Adar Zeitak , Adam Morrison

In large-scale software systems, there are often no fully-fledged bug reports with human-written descriptions when an error occurs. In this case, developers rely on stack traces, i.e., series of function calls that led to the error. Since…

Software Engineering · Computer Science 2024-12-20 Egor Shibaev , Denis Sushentsev , Yaroslav Golubev , Aleksandr Khvorov

Finding desired information from large data set is a difficult problem. Information retrieval is concerned with the structure, analysis, organization, storage, searching, and retrieval of information. Index is the main constituent of an IR…

Information Retrieval · Computer Science 2012-09-26 Md. Abdullah al Mamun , Md. Hanif , Md. Rakib Uddin , Tanvir Ahmed , Md. Mofizul Islam

A compiler's optimizer operates over abstract syntax trees (ASTs), continuously applying rewrite rules to replace subtrees of the AST with more efficient ones. Especially on large source repositories, even simply finding opportunities for a…

Programming Languages · Computer Science 2021-04-09 Darshana Balakrishnan , Carl Nuessle , Oliver Kennedy , Lukasz Ziarek

The widespread use of GPS-enabled devices generates voluminous and continuous amounts of traffic data but analyzing such data for interpretable and actionable insights poses challenges. A hierarchical clustering of the trips has many uses…

Databases · Computer Science 2018-10-15 Chia-Tung Kuo , Ian Davidson

We describe indexes for searching large data sets for variable-length-gapped (VLG) patterns. VLG patterns are composed of two or more subpatterns, between each adjacent pair of which is a gap-constraint specifying upper and lower bounds on…

Data Structures and Algorithms · Computer Science 2020-03-02 Manuel Cáceres , Simon J. Puglisi , Bella Zhukova

The problem of Text Indexing is a fundamental algorithmic problem in which one wishes to preprocess a text in order to quickly locate pattern queries within the text. In the ever evolving world of dynamic and on-line data, there is also a…

Data Structures and Algorithms · Computer Science 2012-08-21 Tsvi Kopelowitz

Developers often try to find occurrences of a certain term in a software system. Traditionally, a text search is limited to static source code files. In this paper, we introduce a simple approach, RuntimeSearch, where the given term is…

Software Engineering · Computer Science 2018-07-26 Matúš Sulír , Jaroslav Porubän

Knowledge-intensive language tasks require NLP systems to both provide the correct answer and retrieve supporting evidence for it in a given corpus. Autoregressive language models are emerging as the de-facto standard for generating…

Computation and Language · Computer Science 2022-04-25 Michele Bevilacqua , Giuseppe Ottaviano , Patrick Lewis , Wen-tau Yih , Sebastian Riedel , Fabio Petroni

In contrast to XML query languages as e.g. XPath which require knowledge on the query language as well as on the document structure, keyword search is open to anybody. As the size of XML sources grows rapidly, the need for efficient search…

Databases · Computer Science 2013-11-27 Stefan Böttcher , Rita Hartel , Jonathan Rabe

Scene text recognition (STR) is very challenging due to the diversity of text instances and the complexity of scenes. The community has paid increasing attention to boost the performance by improving the pre-processing image module, like…

Computer Vision and Pattern Recognition · Computer Science 2020-07-17 Hui Zhang , Quanming Yao , Mingkun Yang , Yongchao Xu , Xiang Bai