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We propose a new approach for clustering DNA features using array CGH data from multiple tumor samples. We distinguish data-collapsing: joining contiguous DNA clones or probes with extremely similar data into regions, from clustering:…

Applications · Statistics 2010-12-21 Kyung In Kim , Etienne Roquain , Mark Van De Wiel

As single-cell gene expression data analysis continues to grow, the need for reliable clustering methods has become increasingly important. The prevalence of heuristic means for method choice could lead to inaccurate reports if…

Quantitative Methods · Quantitative Biology 2026-05-19 Owen Visser , Somnath Datta

In this paper we propose a framework inspired by interacting particle physics and devised to perform clustering on multidimensional datasets. To this end, any given dataset is modeled as an interacting particle system, under the assumption…

Statistical Mechanics · Physics 2012-07-26 Giuliano Armano , Marco Alberto Javarone

The statistical analysis of group studies in neuroscience is particularly challenging due to the complex spatio-temporal nature of the data, its multiple levels and the inter-individual variability in brain responses. In this respect,…

Methodology · Statistics 2025-05-15 Nicolò Margaritella , Vanda Inácio , Ruth King

Mixed data comprises both numeric and categorical features, and mixed datasets occur frequently in many domains, such as health, finance, and marketing. Clustering is often applied to mixed datasets to find structures and to group similar…

Machine Learning · Computer Science 2019-03-20 Amir Ahmad , Shehroz S. Khan

Measuring similarity between two objects is the core operation in existing clustering algorithms in grouping similar objects into clusters. This paper introduces a new similarity measure called point-set kernel which computes the similarity…

Machine Learning · Computer Science 2022-01-07 Kai Ming Ting , Jonathan R. Wells , Ye Zhu

Brain networks, graphical models such as those constructed from MRI, have been widely used in pathological prediction and analysis of brain functions. Within the complex brain system, differences in neuronal connection strengths parcellate…

Machine Learning · Computer Science 2023-05-09 Wei Dai , Hejie Cui , Xuan Kan , Ying Guo , Sanne van Rooij , Carl Yang

Accurate classification of blood cells plays a key role in improving automated blood analysis for both medical and veterinary applications. This work presents a two-stage deep clustering method for classifying blood cells from…

Quantitative Methods · Quantitative Biology 2025-09-25 Mihaela Macarie-Ancau , Adrian Groza

Graph clustering, or community detection, is the task of identifying groups of closely related objects in a large network. In this paper we introduce a new community-detection framework called LambdaCC that is based on a specially weighted…

Data Structures and Algorithms · Computer Science 2018-07-17 Nate Veldt , David Gleich , Anthony Wirth

We introduce a novel method for overlaying cell type proportion data onto tissue images. This approach preserves spatial context while avoiding visual clutter or excessively obscuring the underlying slide. Our proposed technique involves…

Computer Vision and Pattern Recognition · Computer Science 2024-10-10 Lee Mason , Jonas Almeida

Subspace clustering is an important unsupervised clustering approach. It is based on the assumption that the high-dimensional data points are approximately distributed around several low-dimensional linear subspaces. The majority of the…

Machine Learning · Computer Science 2021-12-20 Maryam Abdolali , Nicolas Gillis

Datasets with a mixture of numerical and categorical attributes are routinely encountered in many application domains. In this work we examine an approach to clustering such datasets using homogeneity analysis. Homogeneity analysis…

Machine Learning · Statistics 2017-10-31 Rajiv Sambasivan , Sourish Das

Time series, as one of the most fundamental representations of sequential data, has been extensively studied across diverse disciplines, including computer science, biology, geology, astronomy, and environmental sciences. The advent of…

Machine Learning · Computer Science 2024-12-31 John Paparrizos , Fan Yang , Haojun Li

Clustering algorithms are fundamental tools across many fields, with density-based methods offering particular advantages in identifying arbitrarily shaped clusters and handling noise. However, their effectiveness is often limited by the…

Machine Learning · Computer Science 2025-12-01 Meysam Shirdel Bilehsavar , Razieh Ghaedi , Samira Seyed Taheri , Xinqi Fan , Christian O'Reilly

Clustering is a fundamental data mining tool that aims to divide data into groups of similar items. Generally, intuition about clustering reflects the ideal case -- exact data sets endowed with flawless dissimilarity between individual…

Machine Learning · Computer Science 2016-01-25 Margareta Ackerman , Jarrod Moore

In recent years there has been a growing interest in the role of networks and clusters in the global economy. Despite being a popular research topic in economics, sociology and urban studies, geographical clustering of human activity has…

Physics and Society · Physics 2015-05-19 Roberto Catini , Dmytro Karamshuk , Orion Penner , Massimo Riccaboni

Clustering is indispensable for data analysis in many scientific disciplines. Detecting clusters from heavy noise remains challenging, particularly for high-dimensional sparse data. Based on graph-theoretic framework, the present paper…

Computer Vision and Pattern Recognition · Computer Science 2014-07-08 Deli Zhao , Xiaoou Tang

Clustering is a class of unsupervised learning methods that has been extensively applied and studied in computer vision. Little work has been done to adapt it to the end-to-end training of visual features on large scale datasets. In this…

Computer Vision and Pattern Recognition · Computer Science 2019-03-19 Mathilde Caron , Piotr Bojanowski , Armand Joulin , Matthijs Douze

When scholars suspect units are dependent on each other within clusters but independent of each other across clusters, they employ cluster-robust standard errors (CRSEs). Nevertheless, what to cluster over is sometimes unknown. For…

Methodology · Statistics 2025-11-12 Kentaro Fukumoto

Recently, several clustering algorithms have been used to solve variety of problems from different discipline. This dissertation aims to address different challenging tasks in computer vision and pattern recognition by casting the problems…

Computer Vision and Pattern Recognition · Computer Science 2018-02-08 Yonatan Tariku Tesfaye