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Cancer evolves continuously over time through a complex interplay of genetic, epigenetic, microenvironmental, and phenotypic changes. This dynamic behavior drives uncontrolled cell growth, metastasis, immune evasion, and therapy resistance,…

Quantitative Methods · Quantitative Biology 2025-07-08 Luoting Zhuang , Stephen H. Park , Steven J. Skates , Ashley E. Prosper , Denise R. Aberle , William Hsu

Inspired by the recent success of the Mamba architecture in vision and language domains, we introduce a Unified Attention-Mamba (UAM) backbone. Unlike previous hybrid approaches that integrate Attention and Mamba modules in fixed…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Taixi Chen , Jingyun Chen , Nancy Guo

Long sequences occur in abundance within real-world scenarios, hence properly modelling them opens numerous down-stream use-cases. Deep neural networks, however, have often struggled with these for a variety of reasons. Recent advances,…

Machine Learning · Computer Science 2025-05-23 Jerry Huang

DNA language model aims to decipher the regulatory grammar and semantic of genomes by capturing long range dependencies in DNA sequences. Existing methods emphasize long range token interactions but often ignore the interplay between local…

Artificial Intelligence · Computer Science 2026-05-08 Weihua Wang , Haoji Li , Feilong Bao , Lei Yang , Guanglai Gao

Enhancing mathematical reasoning in Large Language Models typically demands massive datasets, yet data efficiency remains a critical bottleneck. While Curriculum Learning attempts to structure this process, standard unidirectional…

Artificial Intelligence · Computer Science 2026-03-06 Boren Hu , Xiao Liu , Boci Peng , Xinping Zhao , Xiaoran Shang , Yun Zhu , Lijun Wu

CrackMamba, a Mamba-based model, is designed for efficient and accurate crack segmentation for monitoring the structural health of infrastructure. Traditional Convolutional Neural Network (CNN) models struggle with limited receptive fields,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Xin Zuo , Yu Sheng , Jifeng Shen , Yongwei Shan

When hearing music, it is natural for people to dance to its rhythm. Automatic dance generation, however, is a challenging task due to the physical constraints of human motion and rhythmic alignment with target music. Conventional…

Graphics · Computer Science 2023-08-08 Qiaosong Qi , Le Zhuo , Aixi Zhang , Yue Liao , Fei Fang , Si Liu , Shuicheng Yan

Accurate prediction of RNA-associated interactions is essential for understanding cellular regulation and advancing drug discovery. While Biological Large Language Models (BioLLMs) such as ESM-2 and RiNALMo provide powerful sequence…

Genomics · Quantitative Biology 2026-02-27 Rabeya Tus Sadia , Qiang Ye , Qiang Cheng

Large Language Models (LLMs) demonstrate remarkable generalizability across diverse tasks, yet genomic foundation models (GFMs) still require separate finetuning for each downstream application, creating significant overhead as model sizes…

Genomics · Quantitative Biology 2025-02-07 Zehui Li , Vallijah Subasri , Yifei Shen , Dongsheng Li , Yiren Zhao , Guy-Bart Stan , Caihua Shan

Mamba has attracted widespread interest as a general-purpose sequence model due to its low computational complexity and competitive performance relative to transformers. However, its performance can degrade when inference sequence lengths…

Machine Learning · Computer Science 2026-03-16 Jan Rathjens , Robin Schiewer , Laurenz Wiskott , Anand Subramoney

Enhancing and preserving the readability of document images, particularly historical ones, is crucial for effective document image analysis. Numerous models have been proposed for this task, including convolutional-based, transformer-based,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-31 Mohd. Azfar , Siddhant Bharadwaj , Ashwin Sasikumar

Machine comprehension (MC), answering a query about a given context paragraph, requires modeling complex interactions between the context and the query. Recently, attention mechanisms have been successfully extended to MC. Typically these…

Computation and Language · Computer Science 2018-06-22 Minjoon Seo , Aniruddha Kembhavi , Ali Farhadi , Hannaneh Hajishirzi

Remote sensing change detection (CD) has made significant advancements with the adoption of Convolutional Neural Networks (CNNs) and Transformers. While CNNs offer powerful feature extraction, they are constrained by receptive field…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 JunYao Kaung , HongWei Ge

Multivariate Time series forecasting is crucial in domains such as transportation, meteorology, and finance, especially for predicting extreme weather events. State-of-the-art methods predominantly rely on Transformer architectures, which…

Machine Learning · Computer Science 2024-10-16 Li Wu , Wenbin Pei , Jiulong Jiao , Qiang Zhang

A recent line of research has exploited pre-trained generative diffusion models as priors for solving Bayesian inverse problems. We contribute to this research direction by designing a sequential Monte Carlo method for linear-Gaussian…

Machine Learning · Computer Science 2025-10-13 Filip Ekström Kelvinius , Zheng Zhao , Fredrik Lindsten

In applications such as e-commerce, online education, and streaming services, sequential recommendation systems play a critical role. Despite the excellent performance of self-attention-based sequential recommendation models in capturing…

Information Retrieval · Computer Science 2026-02-06 Jinzhao Su , Zhenhua Huang

Depth map super-resolution technology aims to improve the spatial resolution of low-resolution depth maps and effectively restore high-frequency detail information. Traditional convolutional neural network has limitations in dealing with…

Computer Vision and Pattern Recognition · Computer Science 2025-08-04 Chenggang Guo , Hao Xu , XianMing Wan

Diffusion models have been widely employed in the field of 3D manipulation due to their efficient capability to learn distributions, allowing for precise prediction of action trajectories. However, diffusion models typically rely on large…

Multimodal medical image fusion integrates complementary information from different imaging modalities to enhance diagnostic accuracy and treatment planning. While deep learning methods have advanced performance, existing approaches face…

Image and Video Processing · Electrical Eng. & Systems 2025-08-06 Meng Zhou , Farzad Khalvati

The prevalent approach to sequence to sequence learning maps an input sequence to a variable length output sequence via recurrent neural networks. We introduce an architecture based entirely on convolutional neural networks. Compared to…

Computation and Language · Computer Science 2017-07-26 Jonas Gehring , Michael Auli , David Grangier , Denis Yarats , Yann N. Dauphin
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