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Neural network models comprising elements which have exclusively excitatory or inhibitory synapses are capable of a wide range of dynamic behavior, including chaos. In this paper, a simple excitatory-inhibitory neural pair, which forms the…

Disordered Systems and Neural Networks · Physics 2009-10-31 Sitabhra Sinha , Jayanta Basak

Fixed point networks are dynamic networks that encode stimuli via distinct output patterns. Although such networks are omnipresent in neural systems, their structures are typically unknown or poorly characterized. It is therefore valuable…

Neurons and Cognition · Quantitative Biology 2017-05-10 David Blaszka , Elischa Sanders , Jeffrey Riffell , Eli Shlizerman

Spiking neural networks drawing inspiration from biological constraints of the brain promise an energy-efficient paradigm for artificial intelligence. However, challenges exist in identifying guiding principles to train these networks in a…

Neural and Evolutionary Computing · Computer Science 2024-04-25 Joseph A. Kilgore , Jeffrey D. Kopsick , Giorgio A. Ascoli , Gina C. Adam

Our ability to control complex systems is a fundamental challenge of contemporary science. Recently introduced tools to identify the driver nodes, nodes through which we can achieve full control, predict the existence of multiple control…

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

In this paper, we propose closed-form analytical expressions to determine the minimum number of driver nodes that is needed to control a specific class of networks. We consider swarm signaling networks with regular out-degree distribution…

Systems and Control · Electrical Eng. & Systems 2023-03-07 Peng Sun , Robert E. Kooij , Roland Bouffanais

The network of networks(NON) research is focused on studying the properties of n interdependent networks which is ubiquitous in the real world. Identifying the influential nodes in the network of networks is theoretical and practical…

Social and Information Networks · Computer Science 2015-01-26 Meizhu Li , Qi Zhang , Qi Liu , Yong Deng

Deep feedforward and recurrent rate-based neural networks have become successful functional models of the brain, but they neglect obvious biological details such as spikes and Dale's law. Here we argue that these details are crucial in…

Neurons and Cognition · Quantitative Biology 2023-12-29 William F. Podlaski , Christian K. Machens

We investigate the increasingly prominent task of jointly inferring multiple networks from nodal observations. While most joint inference methods assume that observations are available at all nodes, we consider the realistic and more…

Signal Processing · Electrical Eng. & Systems 2025-12-17 Madeline Navarro , Samuel Rey , Andrei Buciulea , Antonio G. Marques , Santiago Segarra

Modularity is one of the most prominent properties of real-world complex networks. Here, we address the issue of module identification in two important classes of networks: bipartite networks and directed unipartite networks. Nodes in…

Data Analysis, Statistics and Probability · Physics 2011-11-10 R. Guimera , M. Sales-Pardo , L. A. N. Amaral

Classification of biological neuron types and networks poses challenges to the full understanding of the brain's organisation and functioning. In this paper, we develop a novel objective classification model of biological neuronal types and…

Neurons and Cognition · Quantitative Biology 2020-03-31 Michael Taynnan Barros , Harun Siljak , Peter Mullen , Constantinos Papadias , Jari Hyttinen , Nicola Marchetti

Controlling a complex network towards a desired state is of great importance in many applications. A network can be controlled by inputting suitable external signals into some selected nodes, which are called driver nodes. Previous works…

Systems and Control · Electrical Eng. & Systems 2022-06-07 Xizhe Zhang , Yuyan Zhu , Yongkang Zhao

Biological networks often encapsulate promotion/inhibition as signed edge-weights of a graph. Nodes may correspond to genes assigned expression levels (mass) of respective proteins. The promotion/inhibition nature of co-expression between…

Molecular Networks · Quantitative Biology 2023-08-21 Anqi Dong , Tryphon T. Georgiou , Allen Tannenbaum

In machine learning, the use of an artificial neural network is the mainstream approach. Such a network consists of layers of neurons. These neurons are of the same type characterized by the two features: (1) an inner product of an input…

Neural and Evolutionary Computing · Computer Science 2017-04-28 Fenglei Fan , Wenxiang Cong , Ge Wang

Neurons in the nervous system exhibit an outstanding variety of morphological and physiological properties. However, close to threshold, this remarkable richness may be grouped succinctly into two basic types of excitability, often referred…

Neurons and Cognition · Quantitative Biology 2008-01-28 Germán Mato , Inés Samengo

Most recent surveys and reviews on Influential Node Ranking Methods (INRMs) hightlight discussions on the methods' technical details, but there still lacks in-depth research on the fundamental issue of how to verify the considerable…

Social and Information Networks · Computer Science 2023-03-24 Bing Zhang , Xuyang Zhao , Jiangtian Nie , Jianhang Tang , Yuling Chen , Yang Zhang , Dusit Niyato

In this paper, we focus on learning low-dimensional embeddings for nodes in graph-structured data. To achieve this, we propose Caps2NE -- a new unsupervised embedding model leveraging a network of two capsule layers. Caps2NE induces a…

Machine Learning · Computer Science 2020-08-19 Dai Quoc Nguyen , Tu Dinh Nguyen , Dat Quoc Nguyen , Dinh Phung

We study collective dynamics of complex networks of stochastic excitable elements, active rotators. In the thermodynamic limit of infinite number of elements, we apply a mean-field theory for the network and then use a Gaussian…

Chaotic Dynamics · Physics 2013-11-19 Bernard Sonnenschein , Michael A. Zaks , Alexander B. Neiman , Lutz Schimansky-Geier

We investigate the collective dynamics of excitatory-inhibitory excitable networks in response to external stimuli. How to enhance dynamic range, which represents the ability of networks to encode external stimuli, is crucial to many…

Neurons and Cognition · Quantitative Biology 2013-12-24 Sen Pei , Shaoting Tang , Shu Yan , Shijin Jiang , Xiao Zhang , Zhiming Zheng

Node classification and link prediction are widely studied in graph representation learning. While both transductive node classification and link prediction operate over a single input graph, they have so far been studied separately. Node…

Machine Learning · Computer Science 2021-08-31 Ralph Abboud , İsmail İlkan Ceylan