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Transformer models typically calculate attention matrices using dot products, which have limitations when capturing nonlinear relationships between embedding vectors. We propose Neural Attention, a technique that replaces dot products with…

Machine Learning · Computer Science 2025-11-10 Andrew DiGiugno , Ausif Mahmood

Attention is an increasingly popular mechanism used in a wide range of neural architectures. The mechanism itself has been realized in a variety of formats. However, because of the fast-paced advances in this domain, a systematic overview…

Computation and Language · Computer Science 2021-10-12 Andrea Galassi , Marco Lippi , Paolo Torroni

Graph Neural Networks (GNNs) are deep learning methods which provide the current state of the art performance in node classification tasks. GNNs often assume homophily -- neighboring nodes having similar features and labels--, and therefore…

Machine Learning · Computer Science 2021-10-26 Liheng Ma , Reihaneh Rabbany , Adriana Romero-Soriano

The success of Transformer-based Language Models (LMs) stems from their attention mechanism. While this mechanism has been extensively studied in explainability research, particularly through the attention values obtained during the forward…

Computation and Language · Computer Science 2024-12-24 Shahar Katz , Lior Wolf

Graph Neural Networks (GNN) has demonstrated the superior performance in many challenging applications, including the few-shot learning tasks. Despite its powerful capacity to learn and generalize the model from few samples, GNN usually…

Machine Learning · Computer Science 2020-10-05 Hao Cheng , Joey Tianyi Zhou , Wee Peng Tay , Bihan Wen

Differentiable Architecture Search (DARTS) provides a baseline for searching effective network architectures based gradient, but it is accompanied by huge computational overhead in searching and training network architecture. Recently, many…

Machine Learning · Computer Science 2020-10-19 Zhaowen Wang , Wei Zhang , Zhiming Wang

Most feedforward convolutional neural networks spend roughly the same efforts for each pixel. Yet human visual recognition is an interaction between eye movements and spatial attention, which we will have several glimpses of an object in…

Computer Vision and Pattern Recognition · Computer Science 2023-04-13 Sia Huat Tan , Runpei Dong , Kaisheng Ma

Traffic forecasting plays a crucial role in intelligent transportation systems. The spatial-temporal complexities in transportation networks make the problem especially challenging. The recently suggested deep learning models share basic…

Machine Learning · Computer Science 2022-03-23 Yuyol Shin , Yoonjin Yoon

Human visual system can selectively attend to parts of a scene for quick perception, a biological mechanism known as Human attention. Inspired by this, recent deep learning models encode attention mechanisms to focus on the most…

Computer Vision and Pattern Recognition · Computer Science 2020-07-07 Qiuxia Lai , Salman Khan , Yongwei Nie , Jianbing Shen , Hanqiu Sun , Ling Shao

Predicting protein secondary structure is a fundamental problem in protein structure prediction. Here we present a new supervised generative stochastic network (GSN) based method to predict local secondary structure with deep hierarchical…

Quantitative Methods · Quantitative Biology 2014-03-07 Jian Zhou , Olga G. Troyanskaya

Attention mechanisms have become a core component of deep learning models, with Channel Attention and Spatial Attention being the two most representative architectures. Current research on their fusion strategies primarily bifurcates into…

Computer Vision and Pattern Recognition · Computer Science 2026-01-26 Zhongming Liu , Bingbing Jiang

The use of Attention Layers has become a trend since the popularization of the Transformer-based models, being the key element for many state-of-the-art models that have been developed through recent years. However, one of the biggest…

Machine Learning · Computer Science 2023-02-14 Giovanni Araujo Bacochina , Rodrigo Clemente Thom de Souza

Graph Neural Networks (GNNs) have been highly successful for the node classification task. GNNs typically assume graphs are homophilic, i.e. neighboring nodes are likely to belong to the same class. However, a number of real-world graphs…

Machine Learning · Computer Science 2024-09-20 Yurui Lai , Taiyan Zhang , Rui Fan

In representation learning on graph-structured data, many popular graph neural networks (GNNs) fail to capture long-range dependencies, leading to performance degradation. Furthermore, this weakness is magnified when the concerned graph is…

Machine Learning · Computer Science 2024-03-07 Mengying Jiang , Guizhong Liu , Yuanchao Su , Xinliang Wu

Synthetic lethality (SL) is a promising gene interaction for cancer therapy. Recent SL prediction methods integrate knowledge graphs (KGs) into graph neural networks (GNNs) and employ attention mechanisms to extract local subgraphs as…

Machine Learning · Computer Science 2025-03-20 Xuexin Chen , Ruichu Cai , Zhengting Huang , Zijian Li , Jie Zheng , Min Wu

Attention mechanisms are at the core of modern neural architectures, powering systems ranging from ChatGPT to autonomous vehicles and driving a major economic impact. However, high-profile failures, such as ChatGPT's nonsensical outputs or…

Software Engineering · Computer Science 2025-11-04 Sigma Jahan , Saurabh Singh Rajput , Tushar Sharma , Mohammad Masudur Rahman

Predicting compound-protein affinity is critical for accelerating drug discovery. Recent progress made by machine learning focuses on accuracy but leaves much to be desired for interpretability. Through molecular contacts underlying…

Biomolecules · Quantitative Biology 2020-01-01 Mostafa Karimi , Di Wu , Zhangyang Wang , Yang Shen

This work presents an analysis of the effectiveness of using standard shallow feed-forward networks to mimic the behavior of the attention mechanism in the original Transformer model, a state-of-the-art architecture for sequence-to-sequence…

Computation and Language · Computer Science 2024-02-06 Vukasin Bozic , Danilo Dordevic , Daniele Coppola , Joseph Thommes , Sidak Pal Singh

Vision transformers using self-attention or its proposed alternatives have demonstrated promising results in many image related tasks. However, the underpinning inductive bias of attention is not well understood. To address this issue, this…

Machine Learning · Computer Science 2022-05-23 Arda Sahiner , Tolga Ergen , Batu Ozturkler , John Pauly , Morteza Mardani , Mert Pilanci

Attention mechanism has been extensively integrated within mainstream neural network architectures, such as Transformers and graph attention networks. Yet, its underlying working principles remain somewhat elusive. What is its essence? Are…

Machine Learning · Computer Science 2024-12-25 Tianyu Ruan , Shihua Zhang