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Point clouds from Terrestrial Laser Scanning (TLS) are an increasingly popular source of data for studying plant structure and function but typically require extensive manual processing to extract ecologically important information. One key…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Harry J. F. Owen , Matthew J. A. Allen , Stuart W. D. Grieve , Phill Wilkes , Emily R. Lines

High-throughput plant phenotyping, the quantitative measurement of observable plant traits, is critical for modern breeding but remains constrained by a "phenotyping bottleneck," where manual data collection is labor-intensive and prone to…

Computer Vision and Pattern Recognition · Computer Science 2026-05-06 Abderrahmene Boudiaf , Sajd Javed

Crop phenology describes the physiological development stages of crops from planting to harvest which is valuable information for decision makers to plan and adapt agricultural management strategies. In the era of big Earth observation data…

Computer Vision and Pattern Recognition · Computer Science 2025-05-13 Shahab Aldin Shojaeezadeh , Abdelrazek Elnashar , Tobias Karl David Weber

The notion of visual similarity is essential for computer vision, and in applications and studies revolving around vector embeddings of images. However, the scarcity of benchmark datasets poses a significant hurdle in exploring how these…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Tillmann Ohm , Andres Karjus , Mikhail Tamm , Maximilian Schich

Segmentation of plant point clouds to obtain high-precise morphological traits is essential for plant phenotyping. Although the fast development of deep learning has boosted much research on segmentation of plant point clouds, previous…

Computer Vision and Pattern Recognition · Computer Science 2024-01-23 Ruiming Du , Zhihong Ma , Pengyao Xie , Yong He , Haiyan Cen

The maturity classification of specialty crops such as strawberries and tomatoes is an essential agricultural downstream activity for selective harvesting and quality control (QC) at production and packaging sites. Recent advancements in…

Computer Vision and Pattern Recognition · Computer Science 2024-05-20 Usman A. Zahidi , Krystian Łukasik , Grzegorz Cielniak

Tracking plant features is crucial for various agricultural tasks like phenotyping, pruning, or harvesting, but the unstructured, cluttered, and deformable nature of plant environments makes it a challenging task. In this context, the…

Robotics · Computer Science 2024-07-25 Samhita Marri , Arun N. Sivakumar , Naveen K. Uppalapati , Girish Chowdhary

Traditional field phenotyping methods are often manual, time-consuming, and destructive, posing a challenge for breeding progress. To address this bottleneck, robotics and automation technologies offer efficient sensing tools to monitor…

Robotics · Computer Science 2024-04-09 Javier Rodriguez-Sanchez , Kyle Johnsen , Changying Li

The pattern analysis of tree structure holds significant scientific value for genetic breeding and forestry management. The current trunk and branch extraction technologies are mainly LiDAR-based or UAV-based. The former approaches obtain…

Computer Vision and Pattern Recognition · Computer Science 2025-05-06 Chenyang Fan , Xujie Zhu , Taige Luo , Sheng Xu , Zhulin Chen , Hongxin Yang

High-throughput technologies to collect field data have made observations possible at scale in several branches of life sciences. The data collected can range from the molecular level (genotypes) to physiological (phenotypic traits) and…

Computational Geometry · Computer Science 2021-07-07 Youjia Zhou , Methun Kamruzzaman , Patrick Schnable , Bala Krishnamoorthy , Ananth Kalyanaraman , Bei Wang

Detailed forest inventories are critical for sustainable and flexible management of forest resources, to conserve various ecosystem services. Modern airborne laser scanners deliver high-density point clouds with great potential for…

Computer Vision and Pattern Recognition · Computer Science 2024-02-26 Binbin Xiang , Maciej Wielgosz , Theodora Kontogianni , Torben Peters , Stefano Puliti , Rasmus Astrup , Konrad Schindler

Measuring semantic traits for phenotyping is an essential but labor-intensive activity in horticulture. Researchers often rely on manual measurements which may not be accurate for tasks such as measuring tree volume. To improve the accuracy…

Robotics · Computer Science 2020-02-03 Wenbo Dong , Pravakar Roy , Volkan Isler

Stomata play a crucial role in regulating plant physiological processes and reflecting environmental responses. However, accurate and high-throughput stomatal phenotyping remains challenging, as conventional approaches rely on destructive…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Quanling Zhao , Meng'en Qin , Yanfeng Sun , Yuan Miao , Xiaohui Yang

Phenomics is an emerging branch of modern biology that uses high throughput phenotyping tools to capture multiple environmental and phenotypic traits, often at massive spatial and temporal scales. The resulting high dimensional data…

Quantitative Methods · Quantitative Biology 2019-06-06 Methun Kamruzzaman , Ananth Kalyanaraman , Bala Krishnamoorthy , Stefan Hey , Patrick Schnable

Early diagnosis of plant diseases is critical for global food safety, yet most AI solutions lack the generalization required for real-world agricultural diversity. These models are typically constrained to specific species, failing to…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Saif Ur Rehman Khan , Muhammad Nabeel Asim , Sebastian Vollmer , Andreas Dengel

Plant phenotyping tasks such as leaf segmentation and counting are fundamental to the study of phenotypic traits. Since it is well-suited for these tasks, deep supervised learning has been prevalent in recent works proposing better…

Computer Vision and Pattern Recognition · Computer Science 2020-12-22 Douglas Pinto Sampaio Gomes , Lihong Zheng

Recent developments in robotic and sensor hardware make data collection with mobile robots (ground or aerial) feasible and affordable to a wide population of users. The newly emergent applications, such as precision agriculture, weather…

Automated extraction of individual plant branches from time-series imagery is essential for high-throughput phenotyping, yet it remains computationally challenging due to non-rigid growth dynamics and severe identity fragmentation within…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Yueqianji Chen , Kevin Williams , John H. Doonan , Paolo Remagnino , Jo Hepworth

The use of artificial intelligence in the agricultural sector has been growing at a rapid rate to automate farming activities. Emergent farming technologies focus on mapping and classification of plants, fruits, diseases, and soil types.…

Computer Vision and Pattern Recognition · Computer Science 2022-07-25 Jakub Pomykala , Francisco de Lemos , Isibor Kennedy Ihianle , David Ada Adama , Pedro Machado

Functional-structural plant models (FSPM) replicate plants' responses to their environment and are useful for predicting behavior in a changing climate. However, they rely on detailed measurements of traits, which are difficult to collect…

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