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Discrete dynamical systems in which model components take on categorical values have been successfully applied to biological networks to study their global dynamic behavior. Boolean models in particular have been used extensively. However,…

Quantitative Methods · Quantitative Biology 2021-09-09 Etan Basser-Ravitz , Arman Darbar , Julia Chifman

Interacting biological systems at all organizational levels display emergent behavior. Modeling these systems is made challenging by the number and variety of biological components and interactions (from molecules in gene regulatory…

Molecular Networks · Quantitative Biology 2023-10-20 Jordan C. Rozum , Colin Campbell , Eli Newby , Fatemeh Sadat Fatemi Nasrollahi , Reka Albert

We consider unstable attractors; Milnor attractors $A$ such that, for some neighbourhood $U$ of $A$, almost all initial conditions leave $U$. Previous research strongly suggests that unstable attractors exist and even occur robustly (i.e.…

Disordered Systems and Neural Networks · Physics 2009-11-11 Peter Ashwin , Marc Timme

Controlling complex networked systems to a desired state is a key research goal in contemporary science. Despite recent advances in studying the impact of network topology on controllability, a comprehensive understanding of the synergistic…

Optimization and Control · Mathematics 2014-08-04 Chen Zhao , Wen-Xu Wang , Yang-Yu Liu , Jean-Jacques Slotine

Dynamical patterns in complex networks of coupled oscillators are both of theoretical and practical interest, yet to fully reveal and understand the interplay between pattern emergence and network structure remains to be an outstanding…

Chaotic Dynamics · Physics 2017-04-03 Dongmei Song , Yafeng Wang , Xiang Gao , Shi-Xian Qu , Ying-Cheng Lai , Xingang Wang

It is a common belief that the order of a Boolean network is mainly determined by its attractors, including fixed points and cycles. Using semi-tensor product (STP) of matrices and the algebraic state-space representation (ASSR) of Boolean…

Systems and Control · Electrical Eng. & Systems 2021-11-30 Xiao Zhang , Zhengping Ji , Daizhan Cheng

We consider networks of dynamical units that evolve in time according to different laws, and are coupled to each other in highly irregular ways. Studying how to steer the dynamics of such systems towards a desired evolution is of great…

Physics and Society · Physics 2020-12-01 Ricardo Gutiérrez , Massimo Materassi , Stefano Focardi , Stefano Boccaletti

Dynamic processes of interacting units on a network are out of equilibrium in general. In the case of a directed tree, the dynamic cavity method provides an efficient tool that characterises the dynamic trajectory of the process for the…

Disordered Systems and Neural Networks · Physics 2022-05-25 Giuseppe Torrisi , Reimer Kühn , Alessia Annibale

An important task in network analysis is the detection of anomalous events in a network time series. These events could merely be times of interest in the network timeline or they could be examples of malicious activity or network…

Machine Learning · Computer Science 2016-08-03 Timothy La Fond , Jennifer Neville , Brian Gallagher

In this paper, we investigate the linear controllability framework for complex networks from a physical point of view. There are three main results. (1) If one applies control signals as determined from the structural controllability…

Systems and Control · Computer Science 2015-09-11 Yu-Zhong Chen , Lezhi Wang , Wenxu Wang , Ying-Cheng Lai

Using a graph-theoretic approach, we derive a new sufficient condition for observability of a Boolean control network (BCN). Based on this condition, we describe two algorithms: the first selects a set of nodes so that observing this set…

Optimization and Control · Mathematics 2020-06-09 Eyal Weiss , Michael Margaliot

The theory of complex networks and of disordered systems is used to study the stability and dynamical properties of a simple model of material flow networks defined on random graphs. In particular we address instabilities that are…

Disordered Systems and Neural Networks · Physics 2009-11-13 Kartik Anand , Tobias Galla

Our ability to control a whole network can be achieved via a small set of driver nodes. While the minimum number of driver nodes needed for control is fixed in a given network, there are multiple choices for the driver node set. A quantity…

Physics and Society · Physics 2025-04-15 Xiaoyao Yu , Yongqing Liang , Xiaomeng Wang , Tao Jia

Recent control trends are increasingly relying on communication networks and wireless channels to close the loop for Internet-of-Things applications. Traditionally these approaches are model-based, i.e., assuming a network or channel model…

Systems and Control · Electrical Eng. & Systems 2019-11-11 Konstantinos Gatsis , George J. Pappas

In a manner similar to the molecular chaos that underlies the stable thermodynamics of gases, neuronal system may exhibit microscopic instability in individual neuronal dynamics while a macroscopic order of the entire population possibly…

Neurons and Cognition · Quantitative Biology 2015-06-23 Yuzuru Yamanaka , Shun-ichi Amari , Shigeru Shinomoto

We investigate the propagation of perturbations in Boolean networks by evaluating the Derrida plot and modifications of it. We show that even small Random Boolean Networks agree well with the predictions of the annealed approximation, but…

Statistical Mechanics · Physics 2009-05-06 Christoph Fretter , Agnes Szejka , Barbara Drossel

In this article, we consider transport networks with uncertain demands. Network dynamics are given by linear hyperbolic partial differential equations and suitable coupling conditions, while demands are incorporated as solutions to…

Optimization and Control · Mathematics 2022-08-16 Simone Göttlich , Thomas Schillinger

Important insights towards the explainability of neural networks reside in the characteristics of their decision boundaries. In this work, we borrow tools from the field of adversarial robustness, and propose a new perspective that relates…

Machine Learning · Computer Science 2020-10-16 Guillermo Ortiz-Jimenez , Apostolos Modas , Seyed-Mohsen Moosavi-Dezfooli , Pascal Frossard

Identifying disturbances in network-coupled dynamical systems without knowledge of the disturbances or underlying dynamics is a problem with a wide range of applications. For example, one might want to know which nodes in the network are…

Machine Learning · Computer Science 2023-07-25 Per Sebastian Skardal , Juan G. Restrepo

Cognitive function is driven by dynamic interactions between large-scale neural circuits or networks, enabling behavior. Fundamental principles constraining these dynamic network processes have remained elusive. Here we use network control…

Neurons and Cognition · Quantitative Biology 2015-10-28 Shi Gu , Fabio Pasqualetti , Matthew Cieslak , Scott T. Grafton , Danielle S. Bassett
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