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Molecular structure generation is a fundamental problem that involves determining the 3D positions of molecules' constituents. It has crucial biological applications, such as molecular docking, protein folding, and molecular design. Recent…

Machine Learning · Computer Science 2025-08-27 Wenyin Zhou , Christopher Iliffe Sprague , Vsevolod Viliuga , Matteo Tadiello , Arne Elofsson , Hossein Azizpour

Handling out-of-distribution samples is a long-lasting challenge for deep visual models. In particular, domain generalization (DG) is one of the most relevant tasks that aims to train a model with a generalization capability on novel…

Computer Vision and Pattern Recognition · Computer Science 2023-11-10 Sang-Yeong Jo , Sung Whan Yoon

Domain Generalization (DG) aims to learn models whose performance remains high on unseen domains encountered at test-time by using data from multiple related source domains. Many existing DG algorithms reduce the divergence between source…

Machine Learning · Computer Science 2022-06-27 Akshay Mehra , Bhavya Kailkhura , Pin-Yu Chen , Jihun Hamm

Decision Focused Learning has emerged as a critical paradigm for integrating machine learning with downstream optimisation. Despite its promise, existing methodologies predominantly rely on probabilistic models and focus narrowly on task…

Machine Learning · Computer Science 2025-03-21 Keivan Shariatmadar , Neil Yorke-Smith , Ahmad Osman , Fabio Cuzzolin , Hans Hallez , David Moens

The knowledge of potentially druggable binding sites on proteins is an important preliminary step towards the discovery of novel drugs. The computational prediction of such areas can be boosted by following the recent major advances in the…

Biomolecules · Quantitative Biology 2021-02-17 Stelios K. Mylonas , Apostolos Axenopoulos , Petros Daras

Deep Gaussian processes (DGPs) are multi-layer hierarchical generalisations of Gaussian processes (GPs) and are formally equivalent to neural networks with multiple, infinitely wide hidden layers. DGPs are probabilistic and non-parametric…

In recent years, machine learning (ML) methods have emerged as promising alternatives for molecular docking, offering the potential for high accuracy without incurring prohibitive computational costs. However, recent studies have indicated…

Biomolecules · Quantitative Biology 2024-05-21 Eric Alcaide , Zhifeng Gao , Guolin Ke , Yaqi Li , Linfeng Zhang , Hang Zheng , Gengmo Zhou

Deepfake detection models often generate natural-language explanations, yet their reasoning is frequently ungrounded in visual evidence, limiting reliability. Existing evaluations measure classification accuracy but overlook reasoning…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Kartik Kuckreja , Parul Gupta , Muhammad Haris Khan , Abhinav Dhall

As deep learning (DL) models are widely and effectively used in Machine Learning as a Service (MLaaS) platforms, there is a rapidly growing interest in DL watermarking techniques that can be used to confirm the ownership of a particular…

Cryptography and Security · Computer Science 2024-11-22 Mikhail Pautov , Nikita Bogdanov , Stanislav Pyatkin , Oleg Rogov , Ivan Oseledets

The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

Machine Learning · Computer Science 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

Deep neural network (DNN) watermarking is a suitable method for protecting the ownership of deep learning (DL) models. It secretly embeds an identifier (watermark) within the model, which can be retrieved by the owner to prove ownership. In…

Cryptography and Security · Computer Science 2025-05-20 Reda Bellafqira , Gouenou Coatrieux

With the development of deep learning, Deep Metric Learning (DML) has achieved great improvements in face recognition. Specifically, the widely used softmax loss in the training process often bring large intra-class variations, and feature…

Computer Vision and Pattern Recognition · Computer Science 2018-05-02 Bowen Wu , Huaming Wu , Monica M. Y. Zhang

Countless domains rely on Machine Learning (ML) models, including safety-critical domains, such as autonomous driving, which this paper focuses on. While the black box nature of ML is simply a nuisance in some domains, in safety-critical…

Artificial Intelligence · Computer Science 2024-06-24 Lynn Vonderhaar , Timothy Elvira , Tyler Procko , Omar Ochoa

The increasing realism and accessibility of deepfakes have raised critical concerns about media authenticity and information integrity. Despite recent advances, deepfake detection models often struggle to generalize beyond their training…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Stelios Mylonas , Symeon Papadopoulos

Multi-modal learning has achieved remarkable success by integrating information from various modalities, achieving superior performance in tasks like recognition and retrieval compared to uni-modal approaches. However, real-world scenarios…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Xiaohao Liu , Xiaobo Xia , Zhuo Huang , See-Kiong Ng , Tat-Seng Chua

Figuring out small molecule binding sites in target proteins, in the resolution of either pocket or residue, is critical in many virtual and real drug-discovery scenarios. Since it is not always easy to find such binding sites based on…

Quantitative Methods · Quantitative Biology 2023-04-19 Daeseok Lee , Jeunghyun Byun , Bonggun Shin

Deep learning (DL) creates impactful advances following a virtuous recipe: model architecture search, creating large training data sets, and scaling computation. It is widely believed that growing training sets and models should improve…

Deep neural networks (DNNs) have made great strides in pushing the state-of-the-art in several challenging domains. Recent studies reveal that they are prone to making overconfident predictions. This greatly reduces the overall trust in…

Computer Vision and Pattern Recognition · Computer Science 2023-09-07 Vinith Kugathasan , Muhammad Haris Khan

Deep Reinforcement Learning (RL) agents often overfit the training environment, leading to poor generalization performance. In this paper, we propose Thinker, a bootstrapping method to remove adversarial effects of confounding features from…

Machine Learning · Computer Science 2022-07-19 Md Masudur Rahman , Yexiang Xue

Learning across domains is challenging when data cannot be centralized due to privacy or heterogeneity, which limits the ability to train a single comprehensive model. Model merging provides an appealing alternative by consolidating…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-16 Junming Liu , Yusen Zhang , Rongchao Zhang , Wenkai Zhu , Tian Wu
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