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A theoretical model for the effect of water hydrogen bonding on the thermodynamics of hydrophobic hydration is proposed as a combination of the classical density functional theory with the recently developed probabilistic approach to water…

Statistical Mechanics · Physics 2011-06-16 Yuri S. Djikaev

Understanding the hydration and diffusion of ions in water at the molecular level is a topic of widespread importance. The ammonium ion (NH$_4^+$) is an exemplar system that has received attention for decades because of its complex…

Computational Physics · Physics 2025-01-14 Jianqing Guo , Liying Zhou , Andrea Zen , Angelos Michaelides , Xifan Wu , Enge Wang , Limei Xu , Ji Chen

The supercooled state of bulk water is largely hidden by unavoidable crystallization, which creates an experimentally inaccessible temperature regime - a 'no man's land'. We address this and circumvent the crystallization problem by…

Soft Condensed Matter · Physics 2013-05-29 Johan Mattsson , Rikard Bergman , Per Jacobsson , Lars Börjesson

Water provides the driving force for the assembly and stability of many cellular components. Despite its impact on biological functions, a nanoscale understanding of the relationship between its structure and dynamics under soft confinement…

Soft Condensed Matter · Physics 2021-01-18 Fausto Martelli , Jason Crain , Giancarlo Franzese

The Bernal-Fowler ice rules stipulate that each water molecule in an ice crystal should form four hydrogen bonds. However, in extreme or constrained conditions, the arrangement of water molecules deviates from conventional ice rules,…

Statistical Mechanics · Physics 2024-07-12 Pavan Ravindra , Xavier R. Advincula , Christoph Schran , Angelos Michaelides , Venkat Kapil

Electron confinement within a small volume is intriguing as a realization of the particle-in-a-box system, which appears in every quantum mechanics textbook. While the electron confinement is readily imaginable in solid-state systems, it…

Optics · Physics 2026-03-16 Korenobu Matsuzaki , Hikaru Kuramochi , Tahei Tahara

Water and water-mediated interactions determine thermodynamic and kinetics of protein folding, protein aggregation and self-assembly in confined spaces. To obtain insights into the role of water in the context of folding problems, we…

Soft Condensed Matter · Physics 2015-05-28 S. Vaitheeswaran , Jie Chen , D. Thirumalai

Liquid water is reluctant to lose hydrogen-bond coordination. Here we reveal that it also demands contraction and reorientation of the second molecular shell to compensate for coordination defects. Such molecular principle will be shown to…

Soft Condensed Matter · Physics 2024-08-27 Nicolás A. Loubet , Alejandro R. Verde , Gustavo A. Appignanesi

Recent studies have shown the possibility of water transport across carbon nanotubes, even in the case of nanotubes with small diameter (0.822 nm). In this case, water shows subcontinuum transport following an ordered 1D structure…

Soft Condensed Matter · Physics 2011-06-23 Luis Figueras , Jordi Faraudo

Fast slip flow was reported for water inside the interlayer gallery between graphene layers or carbon nanotubes. We report here that this flow rate enhancement (over two orders) breaks down with the presence of chemical functionalization…

Mesoscale and Nanoscale Physics · Physics 2014-06-05 Ning Wei , Zhiping Xu

We compared the diffusion of water confined in armchair and zigzag carbon nanotubes for rigid and flexible water models. Using one rigid model, TIP4P/2005, and two flexible models, SPC/Fw and SPC/FH, we found that the number of the number…

We investigated the vibrational dynamics and the structural relaxation of water nanoconfined in porous silica samples with pore size of 4 nm at different levels of hydration and temperature. We used as spectroscopic technique the…

Mesoscale and Nanoscale Physics · Physics 2016-12-21 A. Taschin , P. Bartolini , R. Torre

The hydrogen-bonded structure of methanol-water mixtures is investigated over the entire alcohol concentration range (from $x_{\mathrm{Methanol}}=$ 0.1 to 1.0) at several temperatures, from 300 K down to the freezing point of the given…

Chemical Physics · Physics 2023-07-07 Ildikó Pethes , László Pusztai , László Temleitner

A combination of the extended Ice Rule of Pauling, Raman spectroscopy, and molecular dynamics calculations has enabled us to clarify the bonding origin of the anomalous volume expansion, Raman phonon relaxation, and the stiffness and…

Other Condensed Matter · Physics 2011-10-04 Xi Zhang , Xiaojian Fu , Yu Wen , Jer-lai Kuo , Zexiang Shen , Ji Zhou , Chang Q. Sun

The covalent-like characteristics of hydrogen bonds offer a new perspective on intermolecular interactions. Here, using density functional theory and post-Hartree-Fock methods, we reveal that there are two bonding molecular orbitals (MOs)…

Atomic and Molecular Clusters · Physics 2015-07-09 Bo Wang , Wanrun Jiang , Xing Dai , Yang Gao , Zhigang Wang , Rui-Qin Zhang

Water wires, quasi-one-dimensional chains composed of hydrogen-bonded (H-bonded) water molecules, play a fundamental role in numerous chemical, physical, and physiological processes. Yet direct experimental detection of water wires has been…

Materials Science · Physics 2025-03-07 Fujie Tang , Diana Y. Qiu , Xifan Wu

Water is necessary both for the evolution of life and its continuance. It possesses particular properties that cannot be found in other materials and that are required for life-giving processes. These properties are brought about by the…

Soft Condensed Matter · Physics 2007-06-13 Martin Chaplin

The phase behavior of hydrocarbon fluids confined in porous media has been reported to deviate significantly from that in the bulk environment due to the existence of sub-10nm pores. Though experiments and simulations have measured the…

Soft Condensed Matter · Physics 2020-03-16 Jiaoyan Li , Qi Rao , Yidong Xia , Michael P. Hoepfner , Milind Deo

The properties of the hydrogen bonds in ethylammonium nitrate are analyzed by using molecular dynamics simulations and infrared as well as nuclear magnetic resonance experiments. Ethylammonium nitrate features a flexible three-dimensional…

Chemical Physics · Physics 2018-02-14 Tobias Zentel , Viviane Overbeck , Dirk Michalik , Oliver Kühn , Ralf Ludwig

Using molecular dynamics simulations we study the dynamics of a water-like TIP5P model of water in hydrophilic and hydrophobic confinement. We find that in case of extreme nanocofinement such that there is only one molecular layer of water…

Soft Condensed Matter · Physics 2010-05-14 Pradeep Kumar