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Related papers: Molecule Design by Latent Prompt Transformer

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We propose a molecular generative model based on the conditional variational autoencoder for de novo molecular design. It is specialized to control multiple molecular properties simultaneously by imposing them on a latent space. As a proof…

Machine Learning · Computer Science 2018-06-18 Jaechang Lim , Seongok Ryu , Jin Woo Kim , Woo Youn Kim

Molecular property prediction (MPP) is a fundamental and crucial task in drug discovery. However, prior methods are limited by the requirement for a large number of labeled molecules and their restricted ability to generalize for unseen and…

Quantitative Methods · Quantitative Biology 2024-10-21 Yuyan Liu , Sirui Ding , Sheng Zhou , Wenqi Fan , Qiaoyu Tan

Prompt tuning, in which a base pretrained model is adapted to each task via conditioning on learned prompt vectors, has emerged as a promising approach for efficiently adapting large language models to multiple downstream tasks. However,…

Computation and Language · Computer Science 2023-03-07 Zhen Wang , Rameswar Panda , Leonid Karlinsky , Rogerio Feris , Huan Sun , Yoon Kim

Molecular representation learning is crucial for the problem of molecular property prediction, where graph neural networks (GNNs) serve as an effective solution due to their structure modeling capabilities. Since labeled data is often…

Machine Learning · Computer Science 2023-09-26 Cameron Diao , Kaixiong Zhou , Zirui Liu , Xiao Huang , Xia Hu

Continual Learning (CL) enables machine learning models to learn from continuously shifting new training data in absence of data from old tasks. Recently, pretrained vision transformers combined with prompt tuning have shown promise for…

Computer Vision and Pattern Recognition · Computer Science 2024-04-01 Anurag Roy , Riddhiman Moulick , Vinay K. Verma , Saptarshi Ghosh , Abir Das

Designing molecules with specific properties is a long-lasting research problem and is central to advancing crucial domains such as drug discovery and material science. Recent advances in deep graph generative models treat molecule design…

Machine Learning · Computer Science 2022-03-02 Yuanqi Du , Xiaojie Guo , Amarda Shehu , Liang Zhao

Prompt engineering has emerged as a powerful technique for guiding large language models (LLMs) toward desired responses, significantly enhancing their performance across diverse tasks. Beyond their role as static predictors, LLMs…

Machine Learning · Computer Science 2025-03-27 Ryumei Nakada , Wenlong Ji , Tianxi Cai , James Zou , Linjun Zhang

Latent variable models have been a preferred choice in conversational modeling compared to sequence-to-sequence (seq2seq) models which tend to generate generic and repetitive responses. Despite so, training latent variable models remains to…

Computation and Language · Computer Science 2018-09-20 Tsung-Hsien Wen , Minh-Thang Luong

In the pursuit of efficient automated content creation, procedural generation, leveraging modifiable parameters and rule-based systems, emerges as a promising approach. Nonetheless, it could be a demanding endeavor, given its intricate…

Computer Vision and Pattern Recognition · Computer Science 2024-05-30 Chunyi Sun , Junlin Han , Weijian Deng , Xinlong Wang , Zishan Qin , Stephen Gould

Although LLMs are capable of generating functionally correct code, they also tend to produce less energy-efficient code in comparison to human-written solutions. As these inefficiencies lead to higher computational overhead, they are in…

Machine Learning · Computer Science 2026-04-06 Sophie Weidmann , Fernando Castor

Probabilistic generative deep learning for molecular design involves the discovery and design of new molecules and analysis of their structure, properties and activities by probabilistic generative models using the deep learning approach.…

Machine Learning · Computer Science 2019-02-15 Daniel T. Chang

As the pre-trained language models (PLMs) continue to grow, so do the hardware and data requirements for fine-tuning PLMs. Therefore, the researchers have come up with a lighter method called \textit{Prompt Learning}. However, during the…

Computation and Language · Computer Science 2022-09-07 Yundi Shi , Piji Li , Changchun Yin , Zhaoyang Han , Lu Zhou , Zhe Liu

Prompting has become a practical method for utilizing pre-trained language models (LMs). This approach offers several advantages. It allows an LM to adapt to new tasks with minimal training and parameter updates, thus achieving efficiency…

Audio and Speech Processing · Electrical Eng. & Systems 2024-08-26 Kai-Wei Chang , Haibin Wu , Yu-Kai Wang , Yuan-Kuei Wu , Hua Shen , Wei-Cheng Tseng , Iu-thing Kang , Shang-Wen Li , Hung-yi Lee

Large language models (LLMs) based on the generative pre-training transformer (GPT) have demonstrated remarkable effectiveness across a diverse range of downstream tasks. Inspired by the advancements of the GPT, we present PointGPT, a novel…

Computer Vision and Pattern Recognition · Computer Science 2023-05-24 Guangyan Chen , Meiling Wang , Yi Yang , Kai Yu , Li Yuan , Yufeng Yue

Designing visually diverse and high-quality designs remains a manual, time-consuming process, limiting scalability and personalization in creative workflows. We present a system for generating editable design variations using a decoder-only…

Machine Learning · Computer Science 2026-04-07 Karthik Suresh , Amine Ben Khalifa , Li Zhang , Wei-ting Hsu , Fangzheng Wu , Vinay More , Asim Kadav

We introduce LatentTrack (LT), a sequential neural architecture for online probabilistic prediction under nonstationary dynamics. LT performs causal Bayesian filtering in a low-dimensional latent space and uses a lightweight hypernetwork to…

Machine Learning · Computer Science 2026-02-03 Omer Haq

Prompt Learning has recently gained great popularity in bridging the gap between pretraining tasks and various downstream tasks. It freezes Pretrained Language Models (PLMs) and only tunes a few task-related parameters (prompts) for…

Computation and Language · Computer Science 2022-06-07 Yuezihan Jiang , Hao Yang , Junyang Lin , Hanyu Zhao , An Yang , Chang Zhou , Hongxia Yang , Zhi Yang , Bin Cui

In this work, we introduce a method to fine-tune a Transformer-based generative model for molecular de novo design. Leveraging the superior sequence learning capacity of Transformers over Recurrent Neural Networks (RNNs), our model can…

Machine Learning · Computer Science 2024-03-11 Pengcheng Xu , Tao Feng , Tianfan Fu , Siddhartha Laghuvarapu , Jimeng Sun

Pre-trained Language Model (PLM) has become a representative foundation model in the natural language processing field. Most PLMs are trained with linguistic-agnostic pre-training tasks on the surface form of the text, such as the masked…

Computation and Language · Computer Science 2022-11-11 Yiming Cui , Wanxiang Che , Shijin Wang , Ting Liu

Probabilistic graphical models (PGMs) are widely used to discover latent structure in data, but their success hinges on selecting an appropriate model design. In practice, model specification is difficult and often requires iterative…

Machine Learning · Computer Science 2026-04-08 Kevin Zhang , Yixin Wang