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Accurate prediction of protein-ligand interactions is essential for computer-aided drug discovery. However, existing methods often fail to capture solvent-dependent conformational changes and lack the ability to jointly learn multiple…

The Predictive Associative Memory (PAM) framework posits that useful relationships often connect items that co-occur in shared contexts rather than items that appear similar in embedding space. A contrastive MLP trained on co-occurrence…

Machine Learning · Computer Science 2026-03-24 Jason Dury

I describe an activity created to help our students learn how to write a scientific paper by reverse engineering a contrastive set of existing papers. I look at three recent implementations of this activity and use a multiple cognitive…

Physics Education · Physics 2013-06-21 Paul J. Camp

Contrastive learning is a family of self-supervised methods where a model is trained to solve a classification task constructed from unlabeled data. It has recently emerged as one of the leading learning paradigms in the absence of labels…

Machine Learning · Statistics 2021-03-05 Bingbin Liu , Pradeep Ravikumar , Andrej Risteski

Learning scientific document representations can be substantially improved through contrastive learning objectives, where the challenge lies in creating positive and negative training samples that encode the desired similarity semantics.…

Computation and Language · Computer Science 2022-10-20 Malte Ostendorff , Nils Rethmeier , Isabelle Augenstein , Bela Gipp , Georg Rehm

We introduce supervised contrastive active learning (SCAL) and propose efficient query strategies in active learning based on the feature similarity (featuresim) and principal component analysis based feature-reconstruction error (fre) to…

Machine Learning · Computer Science 2022-08-16 Ranganath Krishnan , Nilesh Ahuja , Alok Sinha , Mahesh Subedar , Omesh Tickoo , Ravi Iyer

Contrastive learning is among the most popular and powerful approaches for self-supervised representation learning, where the goal is to map semantically similar samples close together while separating dissimilar ones in the latent space.…

Machine Learning · Statistics 2025-12-03 Ali Alvandi , Mina Rezaei

Despite experimental and curation efforts, the extent of enzyme promiscuity on substrates continues to be largely unexplored and under documented. Recommender systems (RS), which are currently unexplored for the enzyme-substrate interaction…

Quantitative Methods · Quantitative Biology 2021-10-01 Xinmeng Li , Li-ping Liu , Soha Hassoun

Predicting the chemical properties of compounds is crucial in discovering novel materials and drugs with specific desired characteristics. Recent significant advances in machine learning technologies have enabled automatic predictive…

Quantitative Methods · Quantitative Biology 2021-12-10 Yang Liu , Hisashi Kashima

Reliable molecular property prediction is essential for various scientific endeavors and industrial applications, such as drug discovery. However, the data scarcity, combined with the highly non-linear causal relationships between…

Machine Learning · Computer Science 2025-01-14 Yue Wan , Jialu Wu , Tingjun Hou , Chang-Yu Hsieh , Xiaowei Jia

Multimodal contrastive learning is a methodology for linking different data modalities; the canonical example is linking image and text data. The methodology is typically framed as the identification of a set of encoders, one for each…

Machine Learning · Statistics 2025-06-02 Ricardo Baptista , Andrew M. Stuart , Son Tran

Understanding self-supervised learning is important but challenging. Previous theoretical works study the role of pretraining losses, and view neural networks as general black boxes. However, the recent work of Saunshi et al. argues that…

Machine Learning · Computer Science 2023-04-11 Jeff Z. HaoChen , Tengyu Ma

Protein language models often take into consideration the alignment between a protein sequence and its textual description. However, they do not take structural information into consideration. Traditional methods treat sequence and…

Machine Learning · Computer Science 2026-03-10 Aditya Ranganath , Hasin Us Sami , Kowshik Thopalli , Bhavya Kailkhura , Wesam Sakla

Identifying enzymes that catalyze target biochemical reactions is a key step in computational enzyme discovery and biocatalyst design. Recent representation-learning methods formulate this problem as enzyme--reaction matching, where paired…

Biomolecules · Quantitative Biology 2026-05-26 Gengmo Zhou , Feng Yu , Wenda Wang , Zhifeng Gao , Guolin Ke , Zhewei Wei , Zhen Wang

Understanding structure-property relationships is an essential yet challenging aspect of materials discovery and development. To facilitate this process, recent studies in materials informatics have sought latent embedding spaces of crystal…

Machine Learning · Computer Science 2025-06-23 Yuta Suzuki , Tatsunori Taniai , Ryo Igarashi , Kotaro Saito , Naoya Chiba , Yoshitaka Ushiku , Kanta Ono

Self-supervised contrastive learning is a powerful tool to learn visual representation without labels. Prior work has primarily focused on evaluating the recognition accuracy of various pre-training algorithms, but has overlooked other…

Computer Vision and Pattern Recognition · Computer Science 2022-06-13 Yuanyi Zhong , Haoran Tang , Junkun Chen , Jian Peng , Yu-Xiong Wang

Contrastive learning has moved the state of the art for many tasks in computer vision and information retrieval in recent years. This poster is the first work that applies supervised contrastive learning to the task of product matching in…

Machine Learning · Computer Science 2022-05-03 Ralph Peeters , Christian Bizer

Contrastive self-supervised learning (CSL) has managed to match or surpass the performance of supervised learning in image and video classification. However, it is still largely unknown if the nature of the representations induced by the…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Rohit Gupta , Naveed Akhtar , Ajmal Mian , Mubarak Shah

Self-supervised learning approach like contrastive learning is attached great attention in natural language processing. It uses pairs of training data augmentations to build a classification task for an encoder with well representation…

Computation and Language · Computer Science 2021-12-03 Deshui Miao , Jiaqi Zhang , Wenbo Xie , Jian Song , Xin Li , Lijuan Jia , Ning Guo

Existing text recognition methods usually need large-scale training data. Most of them rely on synthetic training data due to the lack of annotated real images. However, there is a domain gap between the synthetic data and real data, which…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Mingkun Yang , Minghui Liao , Pu Lu , Jing Wang , Shenggao Zhu , Hualin Luo , Qi Tian , Xiang Bai
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