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Selective sweeps are typically associated with a local reduction of genetic diversity around the adaptive site. However, selective sweeps can also quickly carry neutral mutations to observable population frequencies if they arise early in a…

Populations and Evolution · Quantitative Biology 2012-06-29 Philipp W. Messer , Richard A. Neher

We consider random transformations $T_\omega^n:=T_{\sigma^{n-1}\omega}\circ\cdots\circ T_{\sigma\omega}\circ T_\omega,$ where each map $T_{\omega}$ acts on a complete metrizable space $M$. The randomness comes from an invertible ergodic…

Dynamical Systems · Mathematics 2024-02-21 Jason Atnip , Gary Froyland , Cecilia González-Tokman , Sandro Vaienti

The experimental evaluation of algorithms results in a large set of data which generally do not follow a normal distribution or are not heteroscedastic. Besides, some of its entries may be missing, due to the inability of an algorithm to…

Machine Learning · Computer Science 2019-08-16 Iago A Carvalho

Define a permutation to be any sequence of distinct positive integers. Given two permutations p and s on disjoint underlying sets, we denote by p sh s the set of shuffles of p and s (the set of all permutations obtained by interleaving the…

Combinatorics · Mathematics 2019-06-19 Duff Baker-Jarvis , Bruce Sagan

In the first part of the paper, we study the inversion statistic of random permutations under the family $(\mathbb{P}_\theta^{(n)})_{\theta \ge 0}$ of Ewens sampling distributions on $S_n$. We obtain a rather simple exact formula for the…

Probability · Mathematics 2025-11-18 Ross G. Pinsky , Dominic T. Schickentanz

We prove several general formulas for the distributions of various permutation statistics over any set of permutations whose quasisymmetric generating function is a symmetric function. Our formulas involve certain kinds of plethystic…

Combinatorics · Mathematics 2020-08-21 Ira M. Gessel , Yan Zhuang

The set of nonnegative integer lattice points in a polytope, also known as the fiber of a linear map, makes an appearance in several applications including optimization and statistics. We address the problem of sampling from this set using…

Computation · Statistics 2024-07-24 Miles Bakenhus , Sonja Petrović

We revisit the densest binary sphere packings (DBSP) under the periodic boundary conditions and present an updated phase diagram, including newly found 12 putative densest structures over the $x - \alpha$ plane, where $x$ is the relative…

Materials Science · Physics 2021-02-24 Ryotaro Koshoji , Mitsuaki Kawamura , Masahiro Fukuda , Taisuke Ozaki

The periodic (ordinal) patterns of a map are the permutations realized by the relative order of the points in its periodic orbits. We give a combinatorial characterization of the periodic patterns of an arbitrary signed shift, in terms of…

Combinatorics · Mathematics 2013-05-01 Kassie Archer , Sergi Elizalde

We introduce a new sorting device for permutations which makes use of a pop stack augmented with a bypass operation. This results in a sorting machine, which is more powerful than the usual Popstacksort algorithm and seems to have never…

Discrete Mathematics · Computer Science 2025-03-12 Lapo Cioni , Luca Ferrari , Rebecca Smith

The $\sigma$-machine was recently introduced by Cerbai, Claesson and Ferrari as a tool to gain a better insight on the problem of sorting permutations with two stacks in series. It consists of two consecutive stacks, which are restricted in…

Combinatorics · Mathematics 2023-04-06 Giulio Cerbai

Given a permutation $\sigma = \sigma_1 \ldots \sigma_n$ in the symmetric group $\mathcal{S}_{n}$, we say that $\sigma_i$ matches the quadrant marked mesh pattern $\mathrm{MMP}(a,b,c,d)$ in $\sigma$ if there are at least $a$ points to the…

Combinatorics · Mathematics 2023-06-22 Dun Qiu , Jeffrey B. Remmel

A sorting network is a shortest path from 12...n to n...21 in the Cayley graph of S_n generated by nearest-neighbour swaps. We prove that for a uniform random sorting network, as n->infinity the space-time process of swaps converges to the…

Probability · Mathematics 2011-11-10 Omer Angel , Alexander E. Holroyd , Dan Romik , Balint Virag

It is known that backward iterations of independent copies of a contractive random Lipschitz function converge almost surely under mild assumptions. By a sieving (or thinning) procedure based on adding to the functions time and space…

Probability · Mathematics 2020-03-25 Alexander Marynych , Ilya Molchanov

In this paper we look at polynomials arising from statistics on the classes of involutions, $I_n$, and involutions with no fixed points, $J_n$, in the symmetric group. Our results are motivated by F. Brenti's conjecture which states that…

Combinatorics · Mathematics 2007-05-23 W. M. B. Dukes

Datasets in which measurements of two (or more) types are obtained from a common set of samples arise in many scientific applications. A common problem in the exploratory analysis of such data is to identify groups of features of different…

Methodology · Statistics 2024-05-15 Miheer Dewaskar , John Palowitch , Mark He , Michael I. Love , Andrew B. Nobel

We study a family of maps from $S_n \to S_n$ we call fixed point homing shuffles. These maps generalize a few known problems such as Conway's Topswops, and a card shuffling process studied by Gweneth McKinley. We show that the iterates of…

Combinatorics · Mathematics 2025-08-20 Jonathan Parlett

Granular convergence is a property of a granular pack as it is repeatedly sheared in a cyclic, quasistatic fashion, as the packing configuration changes via discrete events. Under suitable conditions the set of microscopic configurations…

Soft Condensed Matter · Physics 2023-08-25 Anna Movsheva , Thomas A. Witten

The special purpose sorting operation, context directed swap (CDS), is an example of the block interchange sorting operation studied in prior work on permutation sorting. CDS has been postulated to model certain molecular sorting events…

Combinatorics · Mathematics 2018-11-30 Marisa Gaetz , Bethany Flanagan , Marion Scheepers , Meghan Shanks

In this article we consider the cycle structure of compositions of pairs of involutions in the symmetric group S_n chosen uniformly at random. These can be modeled as modified 2-regular graphs, giving rise to exponential generating…

Combinatorics · Mathematics 2009-11-19 Michael Lugo