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Recent experimental results suggest that the E. coli chromosome feels a self-attracting interaction of osmotic origin, and is condensed in foci by bridging interactions. Motivated by these findings, we explore a generic modeling framework…

Soft Condensed Matter · Physics 2014-12-09 Vittore F. Scolari , Marco Cosentino Lagomarsino

We present results from extensive molecular dynamics simulations of collapse transitions of hydrophobic polymers in explicit water focused on understanding effects of lengthscale of the hydrophobic surface and of attractive interactions on…

Statistical Mechanics · Physics 2007-05-23 Manoj V. Athawale , Gaurav Goel , Tuhin Ghosh , Thomas M. Truskett , Shekhar Garde

We present molecular dynamics simulations of a simple model for polymer melts with intramolecular barriers. We investigate structural relaxation as a function of the barrier strength. Dynamic correlators can be consistently analyzed within…

Soft Condensed Matter · Physics 2009-11-13 Marco Bernabei , Angel J. Moreno , Juan Colmenero

In a number of experimental situations, single polymer molecules can be suspended in a vacuum. Here collisions between such molecules are considered. The limit of high collision velocity is investigated numerically for a variety of…

Soft Condensed Matter · Physics 2015-05-19 J. M. Deutsch

The forces that mixtures of motorized and passive crosslinking proteins collectively generate between cytoskeletal filaments within our cells are the key drivers of active cellular mechanics. Despite their importance, a unified theory to…

Soft Condensed Matter · Physics 2026-02-23 Cedrik Barutel , Sebastian Fürthauer

Recent investigations on the coalescence of polymeric droplets on a solid substrate have reported strong disagreements; the heart of the issue is whether coalescence of polymeric drops is similar to that of Newtonian fluid and is…

Fluid Dynamics · Physics 2022-08-30 Sarath Chandra Varma , Debayan Dasgupta , Aloke Kumar

Using a transfer matrix technique, we calculate the entropy of polydisperse chains placed on a one-dimensional lattice, as a function of the density of internal and endpoint monomers. The polydispersivity is determined considering different…

Statistical Mechanics · Physics 2009-11-11 Jurgen F. Stilck , Minos A. Neta , Wellington G. Dantas

Indentation is a common experimental technique to study the mechanics of polymeric materials. The main advantage of using indentation is because this provides a direct correlation between the microstructure and the small-scale mechanical…

Soft Condensed Matter · Physics 2022-07-20 Manoj Kumar Maurya , Céline Ruscher , Debashish Mukherji , Manjesh Kumar Singh

We use molecular dynamics simulations to investigate the microscopic and macroscopic response of model polymer networks to uniaxial elongations. By studying networks with strands lengths ranging from $N_s=20$ to 200 we cover the full…

Soft Condensed Matter · Physics 2009-11-10 Carsten Svaneborg , Gary S. Grest , Ralf Everaers

In active materials, uncoordinated internal stresses lead to emergent long-range flows. An understanding of how the behavior of active materials depends on mesoscopic (hydrodynamic) parameters is developing, but there remains a gap in…

Molecular dynamics simulations confirm recent extensional flow experiments showing ring polymer melts exhibit strong extension-rate thickening of the viscosity at Weissenberg numbers $Wi<<1$. Thickening coincides with the extreme elongation…

Soft Condensed Matter · Physics 2020-01-22 Thomas C. O'Connor , Ting Ge , Michael Rubinstein , Gary S. Grest

We examine the thermally-induced fracture of an unstrained polymer chain of discrete segments coupled by an anharmonic potential by means of Molecular Dynamics simulation with a Langevin thermostat. Cases of both under- and over-damped…

Soft Condensed Matter · Physics 2015-05-27 J. Paturej , A. Milchev , V. G. Rostiashvili , T. A. Vilgis

Dense rubbery networks are highly entangled polymer systems, with significant topological restrictions for the mobility of neighbouring chains and crosslinks preventing the reptation constraint release. In a mean field approach,…

Soft Condensed Matter · Physics 2009-11-07 S. Kutter , E. M. Terentjev

Phase separation within polymer networks plays a central role in shaping the structure and mechanics of both synthetic materials and living cells, including the formation of biomolecular condensates within cytoskeletal networks. Previous…

Soft Condensed Matter · Physics 2025-12-01 Takahiro Yokoyama , Yicheng Qiang , David Zwicker , Arash Nikoubashman

Viscosity is a key property of cell membranes that controls mobility of embedded proteins and membrane remodeling. Measuring it is challenging because existing approaches involve complex experimental designs and/or models, and the…

Soft Condensed Matter · Physics 2023-07-19 Hammad A. Faizi , Rumiana Dimova , Petia M. Vlahovska

Active matter agents consume internal energy or extract energy from the environment for locomotion and force generation. Already rather generic models, such as ensembles of active Brownian particles, exhibit phenomena, which are absent at…

Soft Condensed Matter · Physics 2020-07-27 Roland G. Winkler , Gerhard Gompper

We experimentally investigate the effects of polymer additives on the collective dynamics of swarming Serratia marcescens in quasi two-dimensional (2D) liquid films. We find that even minute amounts of polymers (< 20 ppm) can significantly…

Soft Condensed Matter · Physics 2022-08-09 Ranjiangshang Ran , David A. Gagnon , Alexander Morozov , Paulo E. Arratia

Ring polymers are characterized by topology-specific entanglements called threadings. In the limit of large rings, it is conjectured that a "topological glass" should emerge due to the proliferation of threadings. In this study, we used…

Soft Condensed Matter · Physics 2024-11-19 Shota Goto , Takenobu Nakamura , Davide Michieletto , Kang Kim , Nobuyuki Matubayasi

We consider a three-dimensional network of aqueous droplets joined by single lipid bilayers to form a cohesive, tissue-like material. The droplets in these networks can be programmed to have distinct osmolarities so that osmotic gradients…

Soft Condensed Matter · Physics 2016-03-23 T. Zhang , Duanduan Wan , J. M. Schwarz , M. J. Bowick

Self-assembled linear structures like giant cylindrical micelles or discotic molecules in solution stacked in flexible columns are systems reminiscent of polydisperse polymer solutions.These supramolecular polymers have an equilibrium…

Soft Condensed Matter · Physics 2015-06-25 C-C Huang , H. Xu , F. Crevel , J. Wittmer , J. -P. Ryckaert
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