Related papers: Enhanced Graph Pattern Matching
A suffix tree is able to efficiently locate a pattern in an indexed string, but not in general the most recent copy of the pattern in an online stream, which is desirable in some applications. We study the most general version of the…
Ordered matchings, defined as graphs with linearly ordered vertices, where each vertex is connected to exactly one edge, play a crucial role in the area of ordered graphs and their homomorphisms. Therefore, we consider related problems from…
We study a new variant of the string matching problem called cross-document string matching, which is the problem of indexing a collection of documents to support an efficient search for a pattern in a selected document, where the pattern…
In the String Matching in Labeled Graphs (SMLG) problem, we need to determine whether a pattern string appears on a given labeled graph or a given automaton. Under the Orthogonal Vectors hypothesis, the SMLG problem cannot be solved in…
We systematically investigate the complexity of counting subgraph patterns modulo fixed integers. For example, it is known that the parity of the number of $k$-matchings can be determined in polynomial time by a simple reduction to the…
Graph pattern matching involves finding exact or approximate matches for a query subgraph in a larger graph. It has been studied extensively and has strong applications in domains such as computer vision, computational biology, social…
The suffix array, perhaps the most important data structure in modern string processing, is often augmented with the longest common prefix (LCP) array which stores the lengths of the LCPs for lexicographically adjacent suffixes of a string.…
For every integer $g$, isomorphism of graphs of Euler genus at most $g$ can be decided in linear time. This improves previously known algorithms whose time complexity is $n^{O(g)}$ (shown in early 1980's), and in fact, this is the first…
We consider the problem of counting matchings in planar graphs. While perfect matchings in planar graphs can be counted by a classical polynomial-time algorithm, the problem of counting all matchings (possibly containing unmatched vertices,…
Graph data management and querying has many practical applications. When graphs are very heterogeneous and/or users are unfamiliar with their structure, they may need to find how two or more groups of nodes are connected in a graph, even…
The problem of String Matching to Labeled Graphs (SMLG) asks to find all the paths in a labeled graph $G = (V, E)$ whose spellings match that of an input string $S \in \Sigma^m$. SMLG can be solved in quadratic $O(m|E|)$ time [Amir et al.,…
Graph searches and the corresponding search trees can exhibit important structural properties and are used in various graph algorithms. The problem of deciding whether a given spanning tree of a graph is a search tree of a particular search…
Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…
Elek and Lippner (2010) showed that the convergence of a sequence of bounded-degree graphs implies the existence of a limit for the proportion of vertices covered by a maximum matching. We provide a characterization of the limiting…
Graph matching pairs corresponding nodes across two or more graphs. The problem is difficult as it is hard to capture the structural similarity across graphs, especially on large graphs. We propose to incorporate high-order information for…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
We present a theoretical study of a problem arising in database query optimization, which we call as The Common Prefix Problem. We present a $(1-o(1))$ factor approximation algorithm for this problem, when the underlying graph is a binary…
Consider a random graph model where each possible edge $e$ is present independently with some probability $p_e$. Given these probabilities, we want to build a large/heavy matching in the randomly generated graph. However, the only way we…
We study the design of fixed-parameter algorithms for problems already known to be solvable in polynomial time. The main motivation is to get more efficient algorithms for problems with unattractive polynomial running times. Here, we focus…
In this paper, we provide polynomial-time algorithms for different extensions of the matching counting problem, namely maximal matchings, path matchings (linear forest) and paths, on graph classes of bounded clique-width. For maximal…