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A composition of $n\in\NN$ is an ordered collection of one or more positive integers whose sum is $n$. The number of summands is called the number of parts of the composition. A palindromic composition of $n$ is a composition of $n$ in…
The Ward numbers $W(n,k)$ combinatorially enumerate set partitions with block sizes $\geq 2$ and phylogenetic trees (total partition trees). We prove that $W(n,k)$ also counts \emph{increasing Schr\"oder trees} by verifying they satisfy…
In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…
We study a generating function for the sum over fatgraphs with specified valences of vertices and faces, inversely weighted by the order of their symmetry group. A compact expression is found for general (i.e. non necessarily connected)…
Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…
We study a new class of polyominoes, called $p$-Fibonacci polyominoes, defined using $p$-Fibonacci words. We enumerate these polyominoes by applying generating functions to capture geometric parameters such as area, semi-perimeter, and the…
In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…
We investigate compositions of a positive integer with a fixed number of parts, when there are several types of each natural number. These compositions produce new relationships among binomial coefficients, Catalan numbers, and numbers of…
This paper studies the structure of graphs with given tree-width and excluding a fixed complete bipartite subgraph, which generalises the bounded degree setting. We give a new structural description of such graphs in terms of so-called…
A shelling of a graph, viewed as an abstract simplicial complex that is pure of dimension 1, is an ordering of its edges such that every edge is adjacent to some other edges appeared previously. In this paper, we focus on complete bipartite…
A non-local model describing the growth of a tree-like transportation network with given allocation rules is proposed. In this model we focus on tree like networks, and the network transports the very resource it needs to build itself. Some…
We explore the relationship between polynomial functors and (rooted) trees. In the first part we use polynomial functors to derive a new convenient formalism for trees, and obtain a natural and conceptual construction of the category…
In this dissertation, we explore the structure of inversion graphs of permutations--a class of graphs that naturally arises by representing each permutation as a graph, where vertices correspond to entries and edges encode inversions.…
We study the problem of decomposing (clustering) a tree with respect to costs attributed to pairs of nodes, so as to minimize the sum of costs for those pairs of nodes that are in the same component (cluster). For the general case and for…
We present Collaborative Trees, a novel tree model designed for regression prediction, along with its bagging version, which aims to analyze complex statistical associations between features and uncover potential patterns inherent in the…
Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…
We characterize the generating function of bipartite planar maps counted according to the degree distribution of their black and white vertices. This result is applied to the solution of the hard particle and Ising models on random planar…
Recursive partitioning is the core of several statistical methods including CART, random forest, and boosted trees. Despite the popularity of tree based methods, to date, there did not exist methods for combining multiple trees into a…
We build on recent work of Yeats, Courtiel, and others involving connected chord diagrams. We first derive from a Hopf-algebraic foundation a class of tree-like functional equations and prove that they are solved by weighted generating…
We present a graph theoretical approach to the configurational statistics of random tree-like objects, such as randomly branching polymers. In particular, for ideal trees we show that Pr\"ufer labelling provides: (i) direct access to the…