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Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Large language models (LLMs) have shown great potential for automatic code generation and form the basis for various tools such as GitHub Copilot. However, recent studies highlight that many LLM-generated code contains serious security…

Cryptography and Security · Computer Science 2024-09-11 Hossein Hajipour , Lea Schönherr , Thorsten Holz , Mario Fritz

Repository-level code completion remains a challenging task for existing code large language models (code LLMs) due to their limited understanding of repository-specific context and domain knowledge. While retrieval-augmented generation…

Software Engineering · Computer Science 2026-01-28 Tianyue Jiang , Yanli Wang , Yanlin Wang , Daya Guo , Ensheng Shi , Yuchi Ma , Jiachi Chen , Zibin Zheng

This survey reviews how large language models (LLMs) are transforming synthetic training data generation in both natural language and code domains. By producing artificial but task-relevant examples, these models can significantly augment…

Computation and Language · Computer Science 2025-11-21 Mihai Nadas , Laura Diosan , Andreea Tomescu

This study aims to explore the best practices for utilizing GenAI as a programming tool, through a comparative analysis between GPT-4 and GLM-4. By evaluating prompting strategies at different levels of complexity, we identify that simplest…

Software Engineering · Computer Science 2024-02-21 Angus Yang , Zehan Li , Jie Li

Scaling test-time compute via parallel sampling can substantially improve LLM reasoning, but is often limited by Best-of-N selection quality. Generative selection methods, such as GenSelect, address this bottleneck, yet strong selection…

Pre-trained models for Natural Languages (NL) like BERT and GPT have been recently shown to transfer well to Programming Languages (PL) and largely benefit a broad set of code-related tasks. Despite their success, most current methods…

Computation and Language · Computer Science 2021-09-03 Yue Wang , Weishi Wang , Shafiq Joty , Steven C. H. Hoi

As a fundamental task in machine learning, text classification plays a crucial role in many areas. With the rapid scaling of Large Language Models (LLMs), particularly through reinforcement learning (RL), there is a growing need for more…

Computation and Language · Computer Science 2025-04-29 Mingqian He , Fei Zhao , Chonggang Lu , Ziyan Liu , Yue Wang , Haofu Qian

Collecting large amounts of real-world interaction data to train general robotic policies is often prohibitively expensive, thus motivating the use of simulation data. However, existing methods for data generation have generally focused on…

Machine Learning · Computer Science 2024-01-23 Lirui Wang , Yiyang Ling , Zhecheng Yuan , Mohit Shridhar , Chen Bao , Yuzhe Qin , Bailin Wang , Huazhe Xu , Xiaolong Wang

Recent advances in large language models (LLMs) have stepped forward the development of multilingual speech and machine translation by its reduced representation errors and incorporated external knowledge. However, both translation tasks…

Computation and Language · Computer Science 2024-05-17 Yuchen Hu , Chen Chen , Chao-Han Huck Yang , Ruizhe Li , Dong Zhang , Zhehuai Chen , Eng Siong Chng

One of the most striking findings in modern research on large language models (LLMs) is that scaling up compute during training leads to better results. However, less attention has been given to the benefits of scaling compute during…

Computation and Language · Computer Science 2024-11-21 Sean Welleck , Amanda Bertsch , Matthew Finlayson , Hailey Schoelkopf , Alex Xie , Graham Neubig , Ilia Kulikov , Zaid Harchaoui

Pre-trained large language models (LLMs) have significantly improved code generation. As these models scale up, there is an increasing need for the output to handle more intricate tasks and to be appropriately specialized to particular…

Machine Learning · Computer Science 2024-05-22 Xiangru Tang , Bill Qian , Rick Gao , Jiakang Chen , Xinyun Chen , Mark Gerstein

Data generation and analysis is a fundamental aspect of many industries and disciplines, from strategic decision making in business to research in the physical and social sciences. However, data generated using software and algorithms can…

Software Engineering · Computer Science 2023-10-19 Ernesto Giralt Hernández

Generative AI and large language models (LLMs) have shown strong capabilities in code understanding, but their use in cybersecurity, particularly for malware detection and analysis, remains limited. Existing detection systems often fail to…

Information Retrieval · Computer Science 2025-10-23 Hamed Jelodar , Mohammad Meymani , Roozbeh Razavi-Far , Ali A. Ghorbani

Advances in natural language processing, such as transfer learning from pre-trained language models, have impacted how models are trained for programming language tasks too. Previous research primarily explored code pre-training and…

Computation and Language · Computer Science 2023-02-08 Pinzhen Chen , Gerasimos Lampouras

Code data in large language model (LLM) pretraining is recognized crucial not only for code-related tasks but also for enhancing general intelligence of LLMs. Current open-source LLMs often heavily rely on human effort to produce their code…

Mixup is a data augmentation method that generates new data points by mixing a pair of input data. While mixup generally improves the prediction performance, it sometimes degrades the performance. In this paper, we first identify the main…

Machine Learning · Computer Science 2022-01-10 Jy-yong Sohn , Liang Shang , Hongxu Chen , Jaekyun Moon , Dimitris Papailiopoulos , Kangwook Lee

Pre-trained models have achieved remarkable success in natural language processing (NLP). However, existing pre-training methods underutilize the benefits of language understanding for generation. Inspired by the idea of Generative…

Computation and Language · Computer Science 2023-05-10 Jian Yang , Shuming Ma , Li Dong , Shaohan Huang , Haoyang Huang , Yuwei Yin , Dongdong Zhang , Liqun Yang , Furu Wei , Zhoujun Li

Large language models (LLMs) have brought significant advancements to code generation, benefiting both novice and experienced developers. However, their training using unsanitized data from open-source repositories, like GitHub, introduces…

Software Engineering · Computer Science 2023-10-26 Jiexin Wang , Liuwen Cao , Xitong Luo , Zhiping Zhou , Jiayuan Xie , Adam Jatowt , Yi Cai

The ability to comprehend code has long been recognized as an essential skill in software engineering. As programmers lean more heavily on generative artificial intelligence (GenAI) assistants to develop code solutions, it is becoming…

Software Engineering · Computer Science 2025-12-17 Yunhan Qiao , Md Istiak Hossain Shihab , Christopher Hundhausen