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There has been significant recent interest towards achieving highly efficient deep neural network architectures. A promising paradigm for achieving this is the concept of evolutionary deep intelligence, which attempts to mimic biological…

Machine Learning · Computer Science 2016-11-23 Mohammad Javad Shafiee , Alexander Wong

Symbolic regression is the process of identifying mathematical expressions that fit observed output from a black-box process. It is a discrete optimization problem generally believed to be NP-hard. Prior approaches to solving the problem…

Neural and Evolutionary Computing · Computer Science 2021-11-19 T. Nathan Mundhenk , Mikel Landajuela , Ruben Glatt , Claudio P. Santiago , Daniel M. Faissol , Brenden K. Petersen

Neuro-encoded expression programming(NEEP) that aims to offer a novel continuous representation of combinatorial encoding for genetic programming methods is proposed in this paper. Genetic programming with linear representation uses…

Neural and Evolutionary Computing · Computer Science 2021-04-12 Aftab Anjum , Fengyang Sun , Lin Wang , Jeff Orchard

Modern deep learning models are often trained in parallel over a collection of distributed machines to reduce training time. In such settings, communication of model updates among machines becomes a significant performance bottleneck and…

Machine Learning · Computer Science 2022-09-07 Samuel Horvath , Chen-Yu Ho , Ludovit Horvath , Atal Narayan Sahu , Marco Canini , Peter Richtarik

Recently developed deep learning techniques have significantly improved the accuracy of various speech and image recognition systems. In this paper we show how to adapt some of these techniques to create a novel chained convolutional…

Machine Learning · Computer Science 2017-02-20 Akosua Busia , Navdeep Jaitly

Gene selection plays a pivotal role in oncology research for improving outcome prediction accuracy and facilitating cost-effective genomic profiling for cancer patients. This paper introduces two gene selection strategies for deep…

Genomics · Quantitative Biology 2024-03-05 Akhila Krishna , Ravi Kant Gupta , Pranav Jeevan , Amit Sethi

Convolutional Neural Networks (CNNs) have gained a significant attraction in the recent years due to their increasing real-world applications. Their performance is highly dependent to the network structure and the selected optimization…

Neural and Evolutionary Computing · Computer Science 2019-10-01 Parsa Esfahanian , Mohammad Akhavan

Synthesizing user-intended programs from a small number of input-output examples is a challenging problem with several important applications like spreadsheet manipulation, data wrangling and code refactoring. Existing synthesis systems…

Artificial Intelligence · Computer Science 2018-09-17 Ashwin Kalyan , Abhishek Mohta , Oleksandr Polozov , Dhruv Batra , Prateek Jain , Sumit Gulwani

By exploiting discrete signal processing and simulating brain neuron communication, Spiking Neural Networks (SNNs) offer a low-energy alternative to Artificial Neural Networks (ANNs). However, existing SNN models, still face high…

Neural and Evolutionary Computing · Computer Science 2024-11-12 Wenxuan Pan , Feifei Zhao , Bing Han , Haibo Tong , Yi Zeng

Spectral behaviors have been widely discussed in machine learning, yet the optimizer's own spectral bias remains unclear. We argue that first-order optimizers exhibit an intrinsic frequency preference that significantly reshapes the…

Machine Learning · Computer Science 2025-09-08 Gongyue Zhang , Honghai Liu

A promising paradigm for achieving highly efficient deep neural networks is the idea of evolutionary deep intelligence, which mimics biological evolution processes to progressively synthesize more efficient networks. A crucial design factor…

Neural and Evolutionary Computing · Computer Science 2017-04-10 Mohammad Javad Shafiee , Elnaz Barshan , Alexander Wong

Recent deep learning methods have led to increased interest in solving high-efficiency end-to-end transmission problems. These methods, we call nonlinear transform source-channel coding (NTSCC), extract the semantic latent features of…

Signal Processing · Electrical Eng. & Systems 2023-08-21 Sixian Wang , Jincheng Dai , Xiaoqi Qin , Zhongwei Si , Kai Niu , Ping Zhang

Gene expression prediction, which predicts mRNA expression levels from DNA sequences, presents significant challenges. Previous works often focus on extending input sequence length to locate distal enhancers, which may influence target…

Machine Learning · Computer Science 2026-03-13 Zhao Yang , Yi Duan , Jiwei Zhu , Ying Ba , Chuan Cao , Bing Su

Nature evolves structures like honeycombs at optimized performance with limited material. These efficient structures can be artificially created with the collaboration of structural topology optimization and additive manufacturing. However,…

Computational Engineering, Finance, and Science · Computer Science 2023-03-22 Shengze Zhong , Parinya Punpongsanon , Daisuke Iwai , Kosuke Sato

We propose a probabilistic model for interpreting gene expression levels that are observed through single-cell RNA sequencing. In the model, each cell has a low-dimensional latent representation. Additional latent variables account for…

Machine Learning · Computer Science 2018-01-18 Romain Lopez , Jeffrey Regier , Michael Cole , Michael Jordan , Nir Yosef

The reliance of organisations on computer networks is enabled by network programmability, which is typically achieved through Service Function Chaining. These chains virtualise network functions, link them, and programmatically embed them…

Neural and Evolutionary Computing · Computer Science 2025-12-11 Theviyanthan Krishnamohan , Lauritz Thamsen , Paul Harvey

Effective search methods are crucial for improving the performance of deep generative models at test time. In this paper, we introduce a novel test-time search method, Neural Genetic Search (NGS), which incorporates the evolutionary…

Neural and Evolutionary Computing · Computer Science 2025-06-18 Hyeonah Kim , Sanghyeok Choi , Jiwoo Son , Jinkyoo Park , Changhyun Kwon

We address the problem of synthetic gene design using Bayesian optimization. The main issue when designing a gene is that the design space is defined in terms of long strings of characters of different lengths, which renders the…

Machine Learning · Statistics 2015-05-08 Javier González , Joseph Longworth , David C. James , Neil D. Lawrence

Gene transformer models such as Nucleotide Transformer, DNABert, and LOGO are trained to learn optimal gene sequence representations by using the Masked Language Modeling (MLM) training objective over the complete Human Reference Genome.…

Computation and Language · Computer Science 2024-10-23 Soumyadeep Roy , Shamik Sural , Niloy Ganguly

An effective deep learning development process is critical for widespread industrial adoption, particularly in the automotive sector. A typical industrial deep learning development cycle involves customizing and re-designing an…

Computer Vision and Pattern Recognition · Computer Science 2019-09-13 Mohammad Javad Shafiee , Mirko Nentwig , Yohannes Kassahun , Francis Li , Stanislav Bochkarev , Akif Kamal , David Dolson , Secil Altintas , Arif Virani , Alexander Wong
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