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The objective of clustering is to discover natural groups in datasets and to identify geometrical structures which might reside there, without assuming any prior knowledge on the characteristics of the data. The problem can be seen as…

Computational Geometry · Computer Science 2018-01-26 Luis-Evaristo Caraballo , José-Miguel Díaz-Báñez , Nadine Kroher

Chromatic Correlation Clustering (CCC) generalizes Correlation Clustering by assigning multiple categorical relationships (colors) to edges and imposing chromatic constraints on the clusters. Unlike traditional Correlation Clustering, which…

Data Structures and Algorithms · Computer Science 2025-07-22 Dahoon Lee , Chenglin Fan , Euiwoong Lee

Many complex systems and datasets are characterized by multiway interactions of different categories, and can be modeled as edge-colored hypergraphs. We focus on clustering such datasets using the NP-hard edge-colored clustering problem,…

Data Structures and Algorithms · Computer Science 2026-03-04 Seongjune Han , Nate Veldt

The Consensus Clustering problem has been introduced as an effective way to analyze the results of different microarray experiments. The problem consists of looking for a partition that best summarizes a set of input partitions (each…

Data Structures and Algorithms · Computer Science 2009-07-13 Paola Bonizzoni , Gianluca Della Vedova , Riccardo Dondi

Several clustering methods (e.g., Normalized Cut and Ratio Cut) divide the Min Cut cost function by a cluster dependent factor (e.g., the size or the degree of the clusters), in order to yield a more balanced partitioning. We, instead,…

Machine Learning · Computer Science 2025-02-06 Morteza Haghir Chehreghani

The goal of clustering is to group similar objects into meaningful partitions. This process is well understood when an explicit similarity measure between the objects is given. However, far less is known when this information is not readily…

Machine Learning · Computer Science 2020-10-12 Michaël Perrot , Pascal Mattia Esser , Debarghya Ghoshdastidar

We study a variant of classical clustering formulations in the context of algorithmic fairness, known as diversity-aware clustering. In this variant we are given a collection of facility subsets, and a solution must contain at least a…

Data Structures and Algorithms · Computer Science 2022-10-25 Suhas Thejaswi , Ameet Gadekar , Bruno Ordozgoiti , Michal Osadnik

Molecular sequence analysis is crucial for comprehending several biological processes, including protein-protein interactions, functional annotation, and disease classification. The large number of sequences and the inherently complicated…

Genomics · Quantitative Biology 2025-10-10 Sarwan Ali , Prakash Chourasia , Bipin Koirala , Murray Patterson

Consensus clustering, a fundamental task in machine learning and data analysis, aims to aggregate multiple input clusterings of a dataset, potentially based on different non-sensitive attributes, into a single clustering that best…

Machine Learning · Computer Science 2025-06-18 Diptarka Chakraborty , Kushagra Chatterjee , Debarati Das , Tien Long Nguyen , Romina Nobahari

The Connected Vertex Cover problem, where the goal is to compute a minimum set of vertices in a given graph which forms a vertex cover and induces a connected subgraph, is a fundamental combinatorial problem and has received extensive…

Data Structures and Algorithms · Computer Science 2020-04-30 Diptapriyo Majumdar , M. S. Ramanujan , Saket Saurabh

We consider the {\em clustering with diversity} problem: given a set of colored points in a metric space, partition them into clusters such that each cluster has at least $\ell$ points, all of which have distinct colors. We give a…

Data Structures and Algorithms · Computer Science 2010-04-22 Jian Li , Ke Yi , Qin Zhang

We consider the problem of clustering a set of high-dimensional data points into sets of low-dimensional linear subspaces. The number of subspaces, their dimensions, and their orientations are unknown. We propose a simple and low-complexity…

Information Theory · Computer Science 2013-03-18 Reinhard Heckel , Helmut Bölcskei

Given a weighted and complete graph G = (V, E), V denotes the set of n objects to be clustered, and the weight d(u, v) associated with an edge (u, v) belonging to E denotes the dissimilarity between objects u and v. The diameter of a…

Data Structures and Algorithms · Computer Science 2012-06-22 Jiabing Wang , Jiaye Chen

We study the approximability of an existing framework for clustering edge-colored hypergraphs, which is closely related to chromatic correlation clustering and is motivated by machine learning and data mining applications where the goal is…

Data Structures and Algorithms · Computer Science 2023-05-16 Nate Veldt

Cluster analysis often serves as the initial step in the process of data classification. In this paper, the problem of clustering different length input data is considered. The edit distance as the minimum number of elementary edit…

Information Retrieval · Computer Science 2007-05-23 Slobodan Petrovic , Gonzalo Alvarez

Measuring similarity between two objects is the core operation in existing clustering algorithms in grouping similar objects into clusters. This paper introduces a new similarity measure called point-set kernel which computes the similarity…

Machine Learning · Computer Science 2022-01-07 Kai Ming Ting , Jonathan R. Wells , Ye Zhu

Clustering is an unsupervised learning problem that aims to partition unlabelled data points into groups with similar features. Traditional clustering algorithms provide limited insight into the groups they find as their main focus is…

Machine Learning · Computer Science 2022-10-18 Connor Lawless , Oktay Gunluk

This work aims at improving the quality of structural variant prediction from the mapped reads of a sequenced genome. We suggest a new model based on cluster editing in weighted graphs and introduce a new heuristic algorithm that allows to…

Data Structures and Algorithms · Computer Science 2013-10-15 Thomas Bellitto , Tobias Marschall , Alexander Schönhuth , Gunnar W. Klau

We study the problem of transforming bipartite graphs into bicluster graphs. Abu-Khzam, Isenmann, and Merchad [IWOCA '25] introduced two variants of this problem. In both problems, the goal is to transform a bipartite graph into a bicluster…

Data Structures and Algorithms · Computer Science 2025-12-02 Matthias Bentert , Pål Grønås Drange , Erlend Haugen

Given a similarity graph between items, correlation clustering (CC) groups similar items together and dissimilar ones apart. One of the most popular CC algorithms is KwikCluster: an algorithm that serially clusters neighborhoods of…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-21 Xinghao Pan , Dimitris Papailiopoulos , Samet Oymak , Benjamin Recht , Kannan Ramchandran , Michael I. Jordan