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As relational datasets modeled as graphs keep increasing in size and their data-acquisition is permeated by uncertainty, graph-based analysis techniques can become computationally and conceptually challenging. In particular, node centrality…

Social and Information Networks · Computer Science 2020-03-10 Marco Avella-Medina , Francesca Parise , Michael T. Schaub , Santiago Segarra

A hallmark of graph neural networks is their ability to distinguish the isomorphism class of their inputs. This study derives hardness results for the classification variant of graph isomorphism in the message-passing model (MPNN). MPNN…

Machine Learning · Computer Science 2020-10-19 Andreas Loukas

In recent work by Johnson et al. (2022), a framework was described for the study of graph problems over classes specified by omitting each of a finite set of graphs as subgraphs. If a problem falls into the framework then its computational…

Computational Complexity · Computer Science 2025-03-17 Tala Eagling-Vose , Barnaby Martin , Daniel Paulusma , Siani Smith

Message-Passing Graph Neural Networks (GNNs) are known to have limited expressive power, due to their message passing structure. One mechanism for circumventing this limitation is to add unique node identifiers (IDs), which break the…

Machine Learning · Computer Science 2025-02-20 Maya Bechler-Speicher , Moshe Eliasof , Carola-Bibiane Schonlieb , Ran Gilad-Bachrach , Amir Globerson

The ability to detect and count certain substructures in graphs is important for solving many tasks on graph-structured data, especially in the contexts of computational chemistry and biology as well as social network analysis. Inspired by…

Machine Learning · Computer Science 2020-10-30 Zhengdao Chen , Lei Chen , Soledad Villar , Joan Bruna

Graph Neural Networks (GNNs) extend basic Neural Networks (NNs) by using graph structures based on the relational inductive bias (homophily assumption). While GNNs have been commonly believed to outperform NNs in real-world tasks, recent…

Machine Learning · Computer Science 2022-10-17 Sitao Luan , Chenqing Hua , Qincheng Lu , Jiaqi Zhu , Mingde Zhao , Shuyuan Zhang , Xiao-Wen Chang , Doina Precup

Graph Neural Networks have emerged as the most popular architecture for graph-level learning, including graph classification and regression tasks, which frequently arise in areas such as biochemistry and drug discovery. Achieving good…

Machine Learning · Computer Science 2025-03-04 Lukas Fesser , Melanie Weber

Diffusion models have gained popularity in graph generation tasks; however, the extent of their expressivity concerning the graph distributions they can learn is not fully understood. Unlike models in other domains, popular backbones for…

Machine Learning · Computer Science 2025-02-05 Xiyuan Wang , Yewei Liu , Lexi Pang , Siwei Chen , Muhan Zhang

Graph neural networks (GNNs) have emerged as a powerful tool for modeling graph-structured data. However, existing GNNs often struggle with heterophilic graphs, where connected nodes tend to have dissimilar features or labels. While…

Machine Learning · Computer Science 2025-09-17 Ruizhong Qiu , Ting-Wei Li , Gaotang Li , Hanghang Tong

Graph neural networks (GNNs) based methods have achieved impressive performance on node clustering task. However, they are designed on the homophilic assumption of graph and clustering on heterophilic graph is overlooked. Due to the lack of…

Social and Information Networks · Computer Science 2023-05-09 Erlin Pan , Zhao Kang

Graph convolution networks (GCNs) have been enormously successful in learning representations over several graph-based machine learning tasks. Specific to learning rich node representations, most of the methods have solely relied on the…

Machine Learning · Computer Science 2022-11-03 Ashish Tiwari , Sresth Tosniwal , Shanmuganathan Raman

In the branch of mathematics known as graph theory, graphs are considered as a set of points, called vertices, with connections between these points, called edges. The purpose of this paper is to study mappings between two graphs that have…

Combinatorics · Mathematics 2019-03-19 Jeffrey Beyerl , Cameron Sharpe

Graph neural networks (GNNs) are effective machine learning models for various graph learning problems. Despite their empirical successes, the theoretical limitations of GNNs have been revealed recently. Consequently, many GNN models have…

Machine Learning · Computer Science 2020-10-19 Ryoma Sato

Graph Neural Networks (GNNs) have proven to be useful for many different practical applications. However, many existing GNN models have implicitly assumed homophily among the nodes connected in the graph, and therefore have largely…

Machine Learning · Computer Science 2021-06-16 Jiong Zhu , Ryan A. Rossi , Anup Rao , Tung Mai , Nedim Lipka , Nesreen K. Ahmed , Danai Koutra

Counting homomorphisms of a constant sized pattern graph $H$ in an input graph $G$ is a fundamental computational problem. There is a rich history of studying the complexity of this problem, under various constraints on the input $G$ and…

Data Structures and Algorithms · Computer Science 2020-11-20 Suman K. Bera , Noujan Pashanasangi , C. Seshadhri

We consider that a network is an observation, and a collection of observed networks forms a sample. In this setting, we provide methods to test whether all observations in a network sample are drawn from a specified model. We achieve this…

Methodology · Statistics 2020-04-17 P-A. G. Maugis , Carey E. Priebe , S. C. Olhede , P. J. Wolfe

This paper studies the problem of counting homomorphisms from a bipartite source graph to a bipartite target graph. An exact formula is first derived for the number of homomorphisms from a complete bipartite graph into a general bipartite…

Combinatorics · Mathematics 2025-08-21 Igal Sason

Recently, transformer architectures for graphs emerged as an alternative to established techniques for machine learning with graphs, such as (message-passing) graph neural networks. So far, they have shown promising empirical results, e.g.,…

Machine Learning · Computer Science 2024-04-01 Luis Müller , Mikhail Galkin , Christopher Morris , Ladislav Rampášek

Heterophilic Graph Neural Networks (HGNNs) have shown promising results for semi-supervised learning tasks on graphs. Notably, most real-world heterophilic graphs are composed of a mixture of nodes with different neighbor patterns,…

Machine Learning · Computer Science 2025-02-26 Jinluan Yang , Zhengyu Chen , Teng Xiao , Wenqiao Zhang , Yong Lin , Kun Kuang

We perform the first adversarial robustness study into Graph Neural Networks (GNNs) that are provably more powerful than traditional Message Passing Neural Networks (MPNNs). In particular, we use adversarial robustness as a tool to uncover…

Machine Learning · Computer Science 2024-07-04 Francesco Campi , Lukas Gosch , Tom Wollschläger , Yan Scholten , Stephan Günnemann