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Recent foundational language models have shown state-of-the-art performance in many NLP tasks in zero- and few-shot settings. An advantage of these models over more standard approaches based on fine-tuning is the ability to understand…

Computation and Language · Computer Science 2024-04-16 Aleksandra Edwards , Jose Camacho-Collados

Generalized text representations are the foundation of many natural language understanding tasks. To fully utilize the different corpus, it is inevitable that models need to understand the relevance among them. However, many methods ignore…

Computation and Language · Computer Science 2022-08-22 Zhaoye Fei , Yu Tian , Yongkang Wu , Xinyu Zhang , Yutao Zhu , Zheng Liu , Jiawen Wu , Dejiang Kong , Ruofei Lai , Zhao Cao , Zhicheng Dou , Xipeng Qiu

To enhance the domain-specific capabilities of large language models, continued pre-training on a domain-specific corpus is a prevalent method. Recent work demonstrates that adapting models using reading comprehension data formatted by…

Computation and Language · Computer Science 2024-01-19 Ting Jiang , Shaohan Huang , Shengyue Luo , Zihan Zhang , Haizhen Huang , Furu Wei , Weiwei Deng , Feng Sun , Qi Zhang , Deqing Wang , Fuzhen Zhuang

Entity Matching (EM) involves identifying different data representations referring to the same entity from multiple data sources and is typically formulated as a binary classification problem. It is a challenging problem in data integration…

Computation and Language · Computer Science 2023-05-31 John Bosco Mugeni , Steven Lynden , Toshiyuki Amagasa , Akiyoshi Matono

While Large Language Models show remarkable performance in natural language understanding, their resource-intensive nature makes them less accessible. In contrast, smaller language models such as MiniCPM offer more sustainable scalability,…

Computation and Language · Computer Science 2024-08-05 Trapoom Ukarapol , Zhicheng Lee , Amy Xin

Masked language modelling (MLM) as a pretraining objective has been widely adopted in genomic sequence modelling. While pretrained models can successfully serve as encoders for various downstream tasks, the distribution shift between…

Machine Learning · Computer Science 2025-02-26 Monireh Safari , Pablo Millan Arias , Scott C. Lowe , Lila Kari , Angel X. Chang , Graham W. Taylor

Training large language models (LLMs) from scratch requires significant computational resources, driving interest in developing smaller, domain-specific LLMs that maintain both efficiency and strong task performance. Medium-sized models…

Computation and Language · Computer Science 2026-03-02 Chaitali Bhattacharyya , Hyunsei Lee , Junyoung Lee , Shinhyoung Jang , Il hong Suh , Yeseong Kim

Novel deep learning architectures are increasingly being applied to biological data, including genetic sequences. These models, referred to as genomic language models (gLMs), have demonstrated impressive predictive and generative…

Machine Learning · Computer Science 2026-03-24 James R. M. Black , Moritz S. Hanke , Aaron Maiwald , Tina Hernandez-Boussard , Oliver M. Crook , Jaspreet Pannu

Prompt engineering, as an efficient and effective way to leverage Large Language Models (LLM), has drawn a lot of attention from the research community. The existing research primarily emphasizes the importance of adapting prompts to…

Computation and Language · Computer Science 2024-07-08 Yuyan Chen , Zhihao Wen , Ge Fan , Zhengyu Chen , Wei Wu , Dayiheng Liu , Zhixu Li , Bang Liu , Yanghua Xiao

As one of the fundamental tasks in computer vision, semantic segmentation plays an important role in real world applications. Although numerous deep learning models have made notable progress on several mainstream datasets with the rapid…

Computer Vision and Pattern Recognition · Computer Science 2020-10-06 Bin Zhang , Shengjie Zhao , Rongqing Zhang

The parallels between protein sequences and natural language in their sequential structures have inspired the application of large language models (LLMs) to protein understanding. Despite the success of LLMs in NLP, their effectiveness in…

Quantitative Methods · Quantitative Biology 2024-07-09 Yiqing Shen , Zan Chen , Michail Mamalakis , Luhan He , Haiyang Xia , Tianbin Li , Yanzhou Su , Junjun He , Yu Guang Wang

Prompting Large Language Models (LLMs), or providing context on the expected model of operation, is an effective way to steer the outputs of such models to satisfy human desiderata after they have been trained. But in rapidly evolving…

Machine Learning · Computer Science 2025-08-08 Younwoo Choi , Muhammad Adil Asif , Ziwen Han , John Willes , Rahul G. Krishnan

The future development of an AI scientist, a tool that is capable of integrating a variety of experimental data and generating testable hypotheses, holds immense potential. So far, bespoke machine learning models have been created to…

Quantitative Methods · Quantitative Biology 2024-03-05 Tyler D. Ross , Ashwin Gopinath

Large language models (LLMs) have shown strong ability in generating rich representations across domains such as natural language processing and generation, computer vision, and multimodal learning. However, their application in biomedical…

Genomics · Quantitative Biology 2025-09-30 Luxuan Zhang , Douglas Jiang , Qinglong Wang , Haoqi Sun , Feng Tian

Fine-tuning pre-trained generative language models to down-stream language generation tasks has shown promising results. However, this comes with the cost of having a single, large model for each task, which is not ideal in low-memory/power…

Computation and Language · Computer Science 2020-09-22 Zhaojiang Lin , Andrea Madotto , Pascale Fung

Large Language Models (LLMs) are widely deployed in real-world applications, yet their internal mechanisms remain difficult to interpret and control, limiting our ability to diagnose and correct undesirable behaviors. Mechanistic…

With the great success of pre-trained models, the pretrain-then-finetune paradigm has been widely adopted on downstream tasks for source code understanding. However, compared to costly training a large-scale model from scratch, how to…

Software Engineering · Computer Science 2022-03-16 Deze Wang , Zhouyang Jia , Shanshan Li , Yue Yu , Yun Xiong , Wei Dong , Xiangke Liao

Fine-tuning large pre-trained language models on various downstream tasks with whole parameters is prohibitively expensive. Hence, Parameter-efficient fine-tuning has attracted attention that only optimizes a few task-specific parameters…

Computation and Language · Computer Science 2023-05-25 Zhen-Ru Zhang , Chuanqi Tan , Haiyang Xu , Chengyu Wang , Jun Huang , Songfang Huang

Deep neural networks (DNNs) used for brain-computer-interface (BCI) classification are commonly expected to learn general features when trained across a variety of contexts, such that these features could be fine-tuned to specific contexts.…

Machine Learning · Computer Science 2021-01-29 Demetres Kostas , Stephane Aroca-Ouellette , Frank Rudzicz

The fast development of Large Language Models (LLMs) offers growing opportunities to further improve sequential recommendation systems. Yet for some practitioners, integrating LLMs to their existing base recommendation systems raises…

Information Retrieval · Computer Science 2025-04-17 Nanshan Jia , Chenfei Yuan , Yuhang Wu , Zeyu Zheng