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Currently, data-driven discovery in biological sciences resides in finding segmentation strategies in multivariate data that produce sensible descriptions of the data. Clustering is but one of several approaches and sometimes falls short…

Quantitative Methods · Quantitative Biology 2022-08-12 Richard Tjörnhammar

To understand complex biological systems, the research community has produced huge corpus of gene expression data. A large number of clustering approaches have been proposed for the analysis of gene expression data. However, extracting…

Computational Engineering, Finance, and Science · Computer Science 2010-03-28 Swathi. H

The increasing capacity of high-throughput genomic technologies for generating time-course data has stimulated a rich debate on the most appropriate methods to highlight crucial aspects of data structure. In this work, we address the…

Quantitative Methods · Quantitative Biology 2017-12-05 Nuno R. Nené

This paper considers metric spaces where distances between a pair of nodes are represented by distance intervals. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a…

Social and Information Networks · Computer Science 2016-10-17 Weiyu Huang , Alejandro Ribeiro

We propose a novel method for multiple clustering that assumes a co-clustering structure (partitions in both rows and columns of the data matrix) in each view. The new method is applicable to high-dimensional data. It is based on a…

Recent work on explainable clustering allows describing clusters when the features are interpretable. However, much modern machine learning focuses on complex data such as images, text, and graphs where deep learning is used but the raw…

Machine Learning · Computer Science 2021-05-26 Hongjing Zhang , Ian Davidson

Modern graph or network datasets often contain rich structure that goes beyond simple pairwise connections between nodes. This calls for complex representations that can capture, for instance, edges of different types as well as so-called…

Social and Information Networks · Computer Science 2020-02-19 Ilya Amburg , Nate Veldt , Austin R. Benson

Emotion recognition through artificial intelligence and smart sensing of physical and physiological signals (Affective Computing) is achieving very interesting results in terms of accuracy, inference times, and user-independent models. In…

Human-Computer Interaction · Computer Science 2024-10-08 Laura Gutierrez-Martin , Celia Lopez Ongil , Jose M. Lanza-Gutierrez , Jose A. Miranda Calero

State-of-the-art clustering algorithms use heuristics to partition the feature space and provide little insight into the rationale for cluster membership, limiting their interpretability. In healthcare applications, the latter poses a…

Machine Learning · Statistics 2018-12-04 Dimitris Bertsimas , Agni Orfanoudaki , Holly Wiberg

According to the circumplex model of affect, an emotional response could characterized by a level of pleasure (valence) and intensity (arousal). As it reflects on the autonomic nervous system (ANS) activity, modern wearable wristbands can…

Machine Learning · Computer Science 2025-04-16 Marta A. Conceição , Antoine Dubois , Sonja Haustein , Bruno Miranda , Carlos Lima Azevedo

Bi-clustering is a useful approach in analyzing biological data when observations come from heterogeneous groups and have a large number of features. We outline a general Bayesian approach in tackling bi-clustering problems in moderate to…

Applications · Statistics 2021-02-11 Han Yan , Jiexing Wu , Yang Li , Jun S. Liu

Co-clustering simultaneously clusters rows and columns, revealing more fine-grained groups. However, existing co-clustering methods suffer from poor scalability and cannot handle large-scale data. This paper presents a novel and scalable…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-20 Zihan Wu , Zhaoke Huang , Hong Yan

We present a variant of the well sounded Expectation-Maximization Clustering algorithm that is constrained to generate partitions of the input space into high and low values. The motivation of splitting input variables into high and low…

Quantitative Methods · Quantitative Biology 2016-04-27 Joan Garriga , John R. Palmer , Aitana Oltra , Frederic Bartumeus

While clustering is ubiquitously used across science and industry, uncertainty in cluster assignments is rarely quantified with rigorous guarantees. We propose a novel conformal inference framework for clustering that returns confidence…

Methodology · Statistics 2026-04-13 YoonHaeng Hur , Anirban Nath , Genevera Allen

Multi-view clustering has become a significant area of research, with numerous methods proposed over the past decades to enhance clustering accuracy. However, in many real-world applications, it is crucial to demonstrate a clear…

Machine Learning · Computer Science 2025-02-07 Mudi Jiang , Lianyu Hu , Zengyou He , Zhikui Chen

This paper presents a co-clustering technique that, given a collection of images and their hierarchies, clusters nodes from these hierarchies to obtain a coherent multiresolution representation of the image collection. We formalize the…

Computer Vision and Pattern Recognition · Computer Science 2015-10-19 David Varas , Mónica Alfaro , Ferran Marques

Biological and social systems consist of myriad interacting units. The interactions can be represented in the form of a graph or network. Measurements of these graphs can reveal the underlying structure of these interactions, which provides…

Machine Learning · Statistics 2017-10-25 Norbert Binkiewicz , Joshua T. Vogelstein , Karl Rohe

Clustering is one of the most fundamental problems in data analysis and it has been studied extensively in the literature. Though many clustering algorithms have been proposed, clustering theories that justify the use of these clustering…

Machine Learning · Computer Science 2016-02-22 Cheng-Shang Chang , Wanjiun Liao , Yu-Sheng Chen , Li-Heng Liou

How to find a natural grouping of a large real data set? Clustering requires a balance between abstraction and representation. To identify clusters, we need to abstract from superfluous details of individual objects. But we also need a rich…

Machine Learning · Computer Science 2026-01-19 Claudia Plant , Lena G. M. Bauer , Christian Böhm

Many applications from the financial industry successfully leverage clustering algorithms to reveal meaningful patterns among a vast amount of unstructured financial data. However, these algorithms suffer from a lack of interpretability…

Applications · Statistics 2020-07-24 Enguerrand Horel , Kay Giesecke , Victor Storchan , Naren Chittar
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