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Knowledge graph completion (KGC) aims to predict the missing links among knowledge graph (KG) entities. Though various methods have been developed for KGC, most of them can only deal with the KG entities seen in the training set and cannot…

Artificial Intelligence · Computer Science 2022-11-16 Zifeng Ding , Jingpei Wu , Bailan He , Yunpu Ma , Zhen Han , Volker Tresp

In the last few years, the solution to Knowledge Graph (KG) completion via learning embeddings of entities and relations has attracted a surge of interest. Temporal KGs(TKGs) extend traditional Knowledge Graphs (KGs) by associating static…

Artificial Intelligence · Computer Science 2023-02-14 Zhongwu Chen , Chengjin Xu , Fenglong Su , Zhen Huang , You Dou

Knowledge graph embedding (KGE) models have been proposed to improve the performance of knowledge graph reasoning. However, there is a general phenomenon in most of KGEs, as the training progresses, the symmetric relations tend to zero…

Artificial Intelligence · Computer Science 2019-05-24 Jinkui Yao , Lianghua Xu

Biological systems are governed by structured molecular interactions, where pathways, regulatory circuits, and functional gene relationships shape cellular behavior and disease progression. Much of this knowledge is naturally represented as…

Machine Learning · Computer Science 2026-05-26 Yuwei Xue , Sakib Mostafa , James Zou , Joseph Liao , Maximilian Diehn , Ash A. Alizadeh , Lei Xing , Md. Tauhidul Islam

Heterogeneous graphs, comprising diverse node and edge types connected through varied relations, are ubiquitous in real-world applications. Message-passing heterogeneous graph neural networks (HGNNs) have emerged as a powerful model class…

Machine Learning · Computer Science 2025-12-10 Junwei Su , Lingjun Mao , Zheng Da , Chuan Wu

Knowledge Graphs (KGs) store human knowledge in the form of entities (nodes) and relations, and are used extensively in various applications. KG embeddings are an effective approach to addressing tasks like knowledge discovery, link…

Artificial Intelligence · Computer Science 2025-02-03 Ioannis Reklos , Jacopo de Berardinis , Elena Simperl , Albert Meroño-Peñuela

Knowledge graph embeddings (KGE) apply machine learning methods on knowledge graphs (KGs) to provide non-classical reasoning capabilities based on similarities and analogies. The learned KG embeddings are typically used to answer queries by…

Artificial Intelligence · Computer Science 2025-01-28 Yuqicheng Zhu , Nico Potyka , Jiarong Pan , Bo Xiong , Yunjie He , Evgeny Kharlamov , Steffen Staab

Since their introduction by Kipf and Welling in $2017$, a primary use of graph convolutional networks is transductive node classification, where missing labels are inferred within a single observed graph and its feature matrix. Despite the…

Machine Learning · Statistics 2025-09-09 Nils Detering , Luca Galimberti , Anastasis Kratsios , Giulia Livieri , A. Martina Neuman

Learning embeddings of entities and relations existing in knowledge bases allows the discovery of hidden patterns in data. In this work, we examine the geometrical space's contribution to the task of knowledge base completion. We focus on…

Computation and Language · Computer Science 2019-08-20 Prodromos Kolyvakis , Alexandros Kalousis , Dimitris Kiritsis

Aiming to alleviate data sparsity and cold-start problems of traditional recommender systems, incorporating knowledge graphs (KGs) to supplement auxiliary information has recently gained considerable attention. Via unifying the KG with…

Information Retrieval · Computer Science 2022-01-04 Yankai Chen , Menglin Yang , Yingxue Zhang , Mengchen Zhao , Ziqiao Meng , Jianye Hao , Irwin King

Traditional Machine Learning (ML) methods require large amounts of data to perform well, limiting their applicability in sparse or incomplete scenarios and forcing the usage of additional synthetic data to improve the model training. To…

Machine Learning · Computer Science 2025-11-18 Rosario Napoli , Giovanni Lonia , Antonio Celesti , Massimo Villari , Maria Fazio

Graphical models have been popularly used for capturing conditional independence structure in multivariate data, which are often built upon independent and identically distributed observations, limiting their applicability to complex…

Methodology · Statistics 2025-07-03 Yuwen Wang , Changyu Liu , Xin He , Junhui Wang

Designing accurate deep learning models for molecular property prediction plays an increasingly essential role in drug and material discovery. Recently, due to the scarcity of labeled molecules, self-supervised learning methods for learning…

Biomolecules · Quantitative Biology 2022-06-08 Han Li , Dan Zhao , Jianyang Zeng

Representation learning on temporal interaction graphs (TIG) is to model complex networks with the dynamic evolution of interactions arising in a broad spectrum of problems. Existing dynamic embedding methods on TIG discretely update node…

Social and Information Networks · Computer Science 2021-10-13 Xu Yan , Xiaoliang Fan , Peizhen Yang , Zonghan Wu , Shirui Pan , Longbiao Chen , Yu Zang , Cheng Wang

Extracting spatial-temporal knowledge from data is useful in many applications. It is important that the obtained knowledge is human-interpretable and amenable to formal analysis. In this paper, we propose a method that trains neural…

Artificial Intelligence · Computer Science 2022-01-10 Nasim Baharisangari , Kazuma Hirota , Ruixuan Yan , Agung Julius , Zhe Xu

Brain connectomes, representing neural connectivity as graphs, are crucial for understanding brain organization but costly and time-consuming to acquire, motivating generative approaches. Recent advances in graph generative modeling offer a…

Machine Learning · Computer Science 2025-08-14 Yitong Luo , Islem Rekik

Most deep neural networks are trained under fixed network architectures and require retraining when the architecture changes. If expanding the network's size is needed, it is necessary to retrain from scratch, which is expensive. To avoid…

Machine Learning · Computer Science 2023-11-09 Chau Pham , Piotr Teterwak , Soren Nelson , Bryan A. Plummer

In graph representation learning, it is important that the complex geometric structure of the input graph, e.g. hidden relations among nodes, is well captured in embedding space. However, standard Euclidean embedding spaces have a limited…

Machine Learning · Computer Science 2023-07-11 Tuc Nguyen-Van , Dung D. Le , The-Anh Ta

Fault intensity diagnosis (FID) plays a pivotal role in monitoring and maintaining mechanical devices within complex industrial systems. As current FID methods are based on chain of thought without considering dependencies among target…

Textual graphs are ubiquitous in real-world applications, featuring rich text information with complex relationships, which enables advanced research across various fields. Textual graph representation learning aims to generate…

Machine Learning · Computer Science 2024-08-22 Wenbin Hu , Huihao Jing , Qi Hu , Haoran Li , Yangqiu Song
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