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\Graph similarity computation is an essential task in many real-world graph-related applications such as retrieving the similar drugs given a query chemical compound or finding the user's potential friends from the social network database.…

Machine Learning · Computer Science 2024-12-18 Jingjing Wang , Hongjie Zhu , Haoran Xie , Fu Lee Wang , Xiaoliang Xu , Yuxiang Wang

We propose a novel graph visualization method leveraging random walk-based embeddings to replace costly graph-theoretical distance computations. Using word2vec-inspired embeddings, our approach captures both structural and semantic…

Computational Geometry · Computer Science 2025-09-23 Minglai Yang , Reyan Ahmed

Error-tolerant graph matching gathers an important family of problems. These problems aim at finding correspondences between two graphs while integrating an error model. In the Graph Edit Distance (GED) problem, the insertion/deletion of…

Discrete Mathematics · Computer Science 2021-04-19 Romain Raveaux

How can we accurately classify graphs? Graph classification is a pivotal task in data mining with applications in social network analysis, web analysis, drug discovery, molecular property prediction, etc. Graph neural networks have achieved…

Machine Learning · Computer Science 2025-03-28 Minjun Kim , Jaehyeon Choi , SeungJoo Lee , Jinhong Jung , U Kang

This paper presents a spectral framework for quantifying the differentiation between graph data samples by introducing a novel metric named Graph Geodesic Distance (GGD). For two different graphs with the same number of nodes, our framework…

Machine Learning · Computer Science 2025-08-18 Soumen Sikder Shuvo , Ali Aghdaei , Zhuo Feng

In modern relational machine learning it is common to encounter large graphs that arise via interactions or similarities between observations in many domains. Further, in many cases the target entities for analysis are actually signals on…

Finding the graphs that are most similar to a query graph in a large database is a common task with various applications. A widely-used similarity measure is the graph edit distance, which provides an intuitive notion of similarity and…

Databases · Computer Science 2021-10-05 Franka Bause , David B. Blumenthal , Erich Schubert , Nils M. Kriege

Graphs are versatile tools for representing structured data. As a result, a variety of machine learning methods have been studied for graph data analysis. Although many such learning methods depend on the measurement of differences between…

Machine Learning · Statistics 2021-06-18 Tomoki Yoshida , Ichiro Takeuchi , Masayuki Karasuyama

Edit distance, also known as Levenshtein distance, is an essential way to compare two strings that proved to be particularly useful in the analysis of genetic sequences and natural language processing. However, edit distance is a discrete…

Machine Learning · Computer Science 2019-04-30 Evgenii Ofitserov , Vasily Tsvetkov , Vadim Nazarov

Graph anomaly detection (GAD) is a critical task in graph machine learning, with the primary objective of identifying anomalous nodes that deviate significantly from the majority. This task is widely applied in various real-world scenarios,…

Machine Learning · Computer Science 2025-07-03 Xiang Li , Jianpeng Qi , Zhongying Zhao , Guanjie Zheng , Lei Cao , Junyu Dong , Yanwei Yu

Edit-distance-based string similarity search has many applications such as spell correction, data de-duplication, and sequence alignment. However, computing edit distance is known to have high complexity, which makes string similarity…

Databases · Computer Science 2020-05-25 Xinyan Dai , Xiao Yan , Kaiwen Zhou , Yuxuan Wang , Han Yang , James Cheng

We present GeGnn, a learning-based method for computing the approximate geodesic distance between two arbitrary points on discrete polyhedra surfaces with constant time complexity after fast precomputation. Previous relevant methods either…

Computer Vision and Pattern Recognition · Computer Science 2023-10-05 Bo Pang , Zhongtian Zheng , Guoping Wang , Peng-Shuai Wang

Diffusion-based generative graph models have been proven effective in generating high-quality small graphs. However, they need to be more scalable for generating large graphs containing thousands of nodes desiring graph statistics. In this…

Machine Learning · Computer Science 2023-06-01 Xiaohui Chen , Jiaxing He , Xu Han , Li-Ping Liu

Stress models are a promising approach for graph drawing. They minimize the weighted sum of the squared errors of the Euclidean and desired distances for each node pair. The desired distance typically uses the graph-theoretic distances…

Data Structures and Algorithms · Computer Science 2024-03-26 Yosuke Onoue

Generating realistic graph-structured data is challenging due to discrete connectivity, varying graph sizes, and class-specific structural patterns. Recent Generative Adversarial Networks (GAN)-based graph generation methods improve edge…

Machine Learning · Computer Science 2026-05-29 James Sargant , Seyedeh Ava Razi Razavi , Renata Dividino , Sheridan Houghten

High-level synthesis (HLS) tools offer limited support for Engineering Change Orders (ECOs), making late-stage design modifications challenging and costly. This paper introduces a graph-based ECO methodology tailored for Google XLS. A Graph…

Software Engineering · Computer Science 2026-04-17 Alireza Azadi , Paul Rigge , Ethan Mahintorabi , Kenneth B. Kent

In this paper, we study the problem of graph similarity search with graph edit distance (GED) constraints. Due to the NP-hardness of GED computation, existing solutions to this problem adopt the filtering-and-verification framework with a…

Databases · Computer Science 2020-04-03 Jongik Kim

Edge intelligence has arisen as a promising computing paradigm for supporting miscellaneous smart applications that rely on machine learning techniques. While the community has extensively investigated multi-tier edge deployment for…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-01 Liekang Zeng , Chongyu Yang , Peng Huang , Zhi Zhou , Shuai Yu , Xu Chen

Straight-forward conformation generation models, which generate 3-D structures directly from input molecular graphs, play an important role in various molecular tasks with machine learning, such as 3D-QSAR and virtual screening in drug…

Biomolecules · Quantitative Biology 2022-03-16 Shuwen Yang , Tianyu Wen , Ziyao Li , Guojie Song

Many networks, such as transportation, power, and water distribution, can be represented as graphs. Crucial challenge in graph representations is identifying the importance of graph edges and their influence on overall network efficiency…

Social and Information Networks · Computer Science 2023-03-31 Debasish Jana , Sven Malama , Sriram Narasimhan , Ertugrul Taciroglu